LXL04_036481 | RubberDandelionOmics

Gene overview

LXL04_036481

Reference: OH-1004 Chr: Chr08 Coordinates: 43047171-43050697 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3123 bp · LXL04_036481|LXL04_036481|OH1004|cDNA

ATGGGCAAAGGAGCCCGAAACCACGGGATGAAAGAGAGCACAAGCAAATCATCATCAAAGGATCAAAATGTATACGCGGCGTGGGCAAAGGATGTGAAAGAATGCGAAGAGAACTATCAGGTGAAGAGAGAACAAGGTCTATCTGATAATGAAGTCGAGAAGCGGTTACAGACCTACGGGAAAAACGAATTGGAAAAACACGAAGGTCAGTCCATCATCCGTCTCATTCTAGATCAATTCAACGATACTCTAGTCAGAAT...

CDS

Download CDS FASTA

3123 bp · LXL04_036481|LXL04_036481|OH1004|CDS

ATGGGCAAAGGAGCCCGAAACCACGGGATGAAAGAGAGCACAAGCAAATCATCATCAAAGGATCAAAATGTATACGCGGCGTGGGCAAAGGATGTGAAAGAATGCGAAGAGAACTATCAGGTGAAGAGAGAACAAGGTCTATCTGATAATGAAGTCGAGAAGCGGTTACAGACCTACGGGAAAAACGAATTGGAAAAACACGAAGGTCAGTCCATCATCCGTCTCATTCTAGATCAATTCAACGATACTCTAGTCAGAAT...

Protein

Download Protein FASTA

1040 aa · LXL04_036481|LXL04_036481|OH1004|PROTEIN

MGKGARNHGMKESTSKSSSKDQNVYAAWAKDVKECEENYQVKREQGLSDNEVEKRLQTYGKNELEKHEGQSIIRLILDQFNDTLVRILLAAAVISFILAWYDGDEGGEMEITAFVEPLVIFLILIVNAMVGVWQENNAEKALEALKEIQSDQATVIRNGRKIPTLPAKELVPGDIVELRVGDKIPADMRILHLISSTLRIEQGSLTGESEAISKTTKPVSEDCDIQGKKCIVFAGTTVVNGNCVCLVISTGMNTEIGKVH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036481`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036481

Location Chr08:43047171-43050697 (+)

Description Similar to ECA1: Calcium-transporting ATPase 1, endoplasmic reticulum-type

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07810`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the endoplasmic reticulum lumen.	No verified direct reference in this release
`At1g07670`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment.	No verified direct reference in this release
`At4g00900`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036481 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0010042 response to manganese ion Biological Process

GO:0070588 calcium ion transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005388 P-type calcium transporter activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G07670

ath:AT1G07810

ath:AT4G00900

sly:543554

tgo:TGME49_230420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.388

Rank 1 · LXL04_036481 · OH-1004

Cell membrane0.260

Rank 2 · LXL04_036481 · OH-1004

Golgi apparatus0.179

Rank 3 · LXL04_036481 · OH-1004

Cytoplasm0.106

Rank 4 · LXL04_036481 · OH-1004

Lysosome / Vacuole0.097

Rank 5 · LXL04_036481 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00690.32Cation_ATPase_N28-95 aa

PF00122.26E1-E2_ATPase148-262 aa

PF13246.13Cation_ATPase438-616 aa

PF00702.33Hydrolase604-725 aa

PF08282.19Hydrolase_3699-754 aa

PF00689.27Cation_ATPase_C797-1022 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036481	`PF00690.32`	Cation_ATPase_N	28	95	1.3e-20	73.5
LXL04_036481	`PF00122.26`	E1-E2_ATPase	148	262	7.3e-24	84.2
LXL04_036481	`PF13246.13`	Cation_ATPase	438	616	4.2e-36	125.2
LXL04_036481	`PF00702.33`	Hydrolase	604	725	2.7e-19	71.0
LXL04_036481	`PF08282.19`	Hydrolase_3	699	754	1e-05	26.1
LXL04_036481	`PF00689.27`	Cation_ATPase_C	797	1022	4.4e-49	167.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P92939`	Arabidopsis thaliana	Calcium-transporting ATPase 1, endoplasmic reticulum-type	78.510%	Swiss-Prot	strong database homology
`Q9XES1`	Arabidopsis thaliana	Calcium-transporting ATPase 4, endoplasmic reticulum-type	78.223%	Swiss-Prot	strong database homology
`O23087`	Arabidopsis thaliana	Calcium-transporting ATPase 2, endoplasmic reticulum-type	63.785%	Swiss-Prot	strong database homology

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