LXL04_036369 | RubberDandelionOmics

Gene overview

LXL04_036369

Reference: OH-1004 Chr: Chr08 Coordinates: 40919192-40921513 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_036369|LXL04_036369|OH1004|cDNA

ATGAATTATCCGGCGGCGGTCAATCGACCGGTCCGTTTATCTCCGGCAACCAGTTTTCAGAACCCTAGAAGAATCAAAAACATCAAATTACCTCGCCGTTTGGATAAATCTTCATCCTGTACTACATCGACTCTCACCACCTCCGCTACTTCCAAAAGAATCGACTTTCAACACGAAGGATATAGACTTTGGAGTACTTCTCGTTTGCTTCGAAAACCTAGGGTTTCTTCCGACGATGCTCAGCCTAGTGTTTCCTATGA...

CDS

Download CDS FASTA

1572 bp · LXL04_036369|LXL04_036369|OH1004|CDS

ATGAATTATCCGGCGGCGGTCAATCGACCGGTCCGTTTATCTCCGGCAACCAGTTTTCAGAACCCTAGAAGAATCAAAAACATCAAATTACCTCGCCGTTTGGATAAATCTTCATCCTGTACTACATCGACTCTCACCACCTCCGCTACTTCCAAAAGAATCGACTTTCAACACGAAGGATATAGACTTTGGAGTACTTCTCGTTTGCTTCGAAAACCTAGGGTTTCTTCCGACGATGCTCAGCCTAGTGTTTCCTATGA...

Protein

Download Protein FASTA

523 aa · LXL04_036369|LXL04_036369|OH1004|PROTEIN

MNYPAAVNRPVRLSPATSFQNPRRIKNIKLPRRLDKSSSCTTSTLTTSATSKRIDFQHEGYRLWSTSRLLRKPRVSSDDAQPSVSYDECEISEPSFLEFITSERVKVVAMVALALALCNADRVVMSVAVVPLSQSRGWSQSFAGVVQSSFLWGYLISPIAGGTLVDYYGGKVVMACGVALWSMATFLTPWAAENSLLALLTMRALLGVAEGVALPCMNNMIARWFPQTERSRAVGLAMAGFQLGSAIGLTLSPILMSQGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036369`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036369

Location Chr08:40919192-40921513 (+)

Description Similar to ANTR4: Probable anion transporter 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46980`	Inorganic phosphate and probable anion transporter.	No verified direct reference in this release
`At2g38060`	Inorganic phosphate and probable anion transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0852200`	Probable anion transporter.	No verified direct reference in this release
`Os05g0451100`	Probable anion transporter.	No verified direct reference in this release
`Os09g0570400`	Probable anion transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036369 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006811 monoatomic ion transport Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0005315 phosphate transmembrane transporter activity Molecular Function

GO:0015229 L-ascorbic acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G38060

ath:AT3G46980

dosa:Os01g0852200

dosa:Os05g0451100

dosa:Os09g0570400

osa:4324813

osa:4338960

osa:4347913

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.958

Rank 1 · LXL04_036369 · OH-1004

Mitochondrion0.031

Rank 2 · LXL04_036369 · OH-1004

Peroxisome0.021

Rank 3 · LXL04_036369 · OH-1004

Golgi apparatus0.018

Rank 4 · LXL04_036369 · OH-1004

Endoplasmic reticulum0.018

Rank 5 · LXL04_036369 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_1112-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036369	`PF07690.22`	MFS_1	112	477	1.1e-48	166.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q66GI9`	Arabidopsis thaliana	Probable anion transporter 4, chloroplastic	73.789%	Swiss-Prot	strong database homology
`Q7XJR2`	Arabidopsis thaliana	Probable anion transporter 3, chloroplastic	57.831%	Swiss-Prot	strong database homology
`Q8W0H5`	Oryza sativa subsp. japonica	Probable anion transporter 3, chloroplastic	73.239%	Swiss-Prot	strong database homology
`Q53WP9`	Oryza sativa subsp. japonica	Probable anion transporter 2, chloroplastic	54.545%	Swiss-Prot	strong database homology
`Q652N5`	Oryza sativa subsp. japonica	Probable anion transporter 4, chloroplastic	38.900%	Swiss-Prot	moderate database homology

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