LXL04_036321 | RubberDandelionOmics

Gene overview

LXL04_036321

Reference: OH-1004 Chr: Chr08 Coordinates: 40004866-40006829 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

975 bp · LXL04_036321|LXL04_036321|OH1004|cDNA

ATGCCACGCGTCCAAATACCATTGCATGTCTTAAATTTCTGGGGCCAACCAGGCTTCACTACTAGCAATCTTCCCTTCCAAAATGTTCCAGAAAATCACCAATGGCGGGGATCAGTTGCTGTTGCCCCTCCGCGCTCTCCTCTAGAAGGTAAATTCCTCATCGTCAAGTTCTTTCTTCTGACCCTTTCAATTCGAAATAACCAGGTAAATCCCCAAATCAATGCTCTCACTCGCAATTTAGGGACACCGTCGTTGCGGTT...

CDS

Download CDS FASTA

975 bp · LXL04_036321|LXL04_036321|OH1004|CDS

ATGCCACGCGTCCAAATACCATTGCATGTCTTAAATTTCTGGGGCCAACCAGGCTTCACTACTAGCAATCTTCCCTTCCAAAATGTTCCAGAAAATCACCAATGGCGGGGATCAGTTGCTGTTGCCCCTCCGCGCTCTCCTCTAGAAGGTAAATTCCTCATCGTCAAGTTCTTTCTTCTGACCCTTTCAATTCGAAATAACCAGGTAAATCCCCAAATCAATGCTCTCACTCGCAATTTAGGGACACCGTCGTTGCGGTT...

Protein

Download Protein FASTA

324 aa · LXL04_036321|LXL04_036321|OH1004|PROTEIN

MPRVQIPLHVLNFWGQPGFTTSNLPFQNVPENHQWRGSVAVAPPRSPLEGKFLIVKFFLLTLSIRNNQVNPQINALTRNLGTPSLRFNNTHRIKTTRNSRTSLRISAEIDYVNAEDAKKLIAEEGYSIVDVRDRIQFERAHIKSCNHVPLFIENQDNDICTLQTLPTTIKFMKSLNFFDFDKHFRFAATIINRQLHNNFSGLFYGLPFTKPNPDFVQSVKSKFSPDSKILIVCQEGLRSAGAANKLEAAGFENIACITSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036321`
TK1151 ID	TkA04G055110
OH-1004 ID	LXL04_036321
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036321

Location Chr08:40004866-40006829 (-)

Description Similar to STR9: Rhodanese-like domain-containing protein 9, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42220`	Rhodanese-like domain-containing protein 9, chloroplastic.	No verified direct reference in this release
`At3g08920`	Rhodanese-like domain-containing protein 10.	No verified direct reference in this release
`At4g24750`	Rhodanese-like domain-containing protein 11, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036321 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G42220

ath:AT3G08920

ath:AT4G24750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.977

Rank 1 · LXL04_036321 · OH-1004

Mitochondrion0.032

Rank 2 · LXL04_036321 · OH-1004

Cytoplasm0.016

Rank 3 · LXL04_036321 · OH-1004

Nucleus0.014

Rank 4 · LXL04_036321 · OH-1004

Cell membrane0.009

Rank 5 · LXL04_036321 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00581.26Rhodanese114-151 aa

PF00581.26Rhodanese211-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036321	`PF00581.26`	Rhodanese	114	151	4.5e-11	43.8
LXL04_036321	`PF00581.26`	Rhodanese	211	264	4.5e-11	43.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48529`	Arabidopsis thaliana	Rhodanese-like domain-containing protein 9, chloroplastic	64.679%	Swiss-Prot	moderate database homology
`Q9SR92`	Arabidopsis thaliana	Rhodanese-like domain-containing protein 10	29.817%	Swiss-Prot	weak database homology
`Q0WWT7`	Arabidopsis thaliana	Rhodanese-like domain-containing protein 11, chloroplastic	31.818%	Swiss-Prot	moderate database homology

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