LXL04_036284 | RubberDandelionOmics

Gene overview

LXL04_036284

Reference: OH-1004 Chr: Chr08 Coordinates: 39254361-39258121 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2364 bp · LXL04_036284|LXL04_036284|OH1004|cDNA

ATGATCTCGTTACAAAAGTTGACTTGCTCATGGTCACTAGTGGCCACCATTGCTTCAGTTGTGGCATTGGTTTCGGTTGTTCATATGTTCTTGTTTCCTGCTGTGCCTTCTTTTGATTACTTTGGATATAATCAAGTCAAAGACTCTTGTATCCCAATTAACAAAACAATTAATGTGGAAAAGAAGCACATTTCGCCTTTAAATGTGCGGTTTCCAGCTGACTTACATAACGCGGTTGTATATCGTGGTGCACCATGGAA...

CDS

Download CDS FASTA

2364 bp · LXL04_036284|LXL04_036284|OH1004|CDS

ATGATCTCGTTACAAAAGTTGACTTGCTCATGGTCACTAGTGGCCACCATTGCTTCAGTTGTGGCATTGGTTTCGGTTGTTCATATGTTCTTGTTTCCTGCTGTGCCTTCTTTTGATTACTTTGGATATAATCAAGTCAAAGACTCTTGTATCCCAATTAACAAAACAATTAATGTGGAAAAGAAGCACATTTCGCCTTTAAATGTGCGGTTTCCAGCTGACTTACATAACGCGGTTGTATATCGTGGTGCACCATGGAA...

Protein

Download Protein FASTA

787 aa · LXL04_036284|LXL04_036284|OH1004|PROTEIN

MISLQKLTCSWSLVATIASVVALVSVVHMFLFPAVPSFDYFGYNQVKDSCIPINKTINVEKKHISPLNVRFPADLHNAVVYRGAPWKSEIGQWLSGCSSVATTIKVLEPIGGKKCEDGCSGQGICNHELGECRCFHGFSGERCSERLELSCNYPATEELPYGRWVVSICSTHCDTTRAMCFCGAGTKYPNRPVAESCGFQMILPSEPGGPKDVDWSKPDHDNIFTTNGSLPGWCNVDPVEAYASNVKFKEECDCKYDGLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036284`
TK1151 ID	TkA04G058310
OH-1004 ID	LXL04_036284
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.100
Protein coverage (%)	TK1151 92.486 / OH-1004 19.822 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036284

Location Chr08:39254361-39258121 (-)

Description Similar to F8H: Probable glucuronoxylan glucuronosyltransferase F8H

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22940`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	No verified direct reference in this release
`At5g61840`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	No verified direct reference in this release
`At1g27440`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	The Arabidopsis IRX10 and IRX10-LIKE glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation.2009 · DOI: 10.1111/j.1365-313x.2008.03724.x Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2008.03729.x Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L pairs of glycosyltransferase genes reveals critical contributions to biosynthesis of the hemicellulose glucuronoxylan.2010 · DOI: 10.1104/pp.110.154971

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0520750`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release
`Os01g0926700`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036284 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT1G27440

ath:AT5G22940

ath:AT5G61840

dosa:Os01g0926700

dosa:Os02g0520750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.704

Rank 1 · LXL04_036284 · OH-1004

Endoplasmic reticulum0.216

Rank 2 · LXL04_036284 · OH-1004

Cytoplasm0.080

Rank 3 · LXL04_036284 · OH-1004

Cell membrane0.044

Rank 4 · LXL04_036284 · OH-1004

Nucleus0.040

Rank 5 · LXL04_036284 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23106.2EGF_Teneurin115-146 aa

PF23106.2EGF_Teneurin272-300 aa

PF03016.21Exostosin_GT47341-692 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036284	`PF23106.2`	EGF_Teneurin	115	146	1e-09	39.0
LXL04_036284	`PF23106.2`	EGF_Teneurin	272	300	1e-09	39.0
LXL04_036284	`PF03016.21`	Exostosin_GT47	341	692	2.2e-64	218.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NMM8`	Arabidopsis thaliana	Probable glucuronoxylan glucuronosyltransferase F8H	28.267%	Swiss-Prot	weak database homology
`Q940Q8`	Arabidopsis thaliana	Probable beta-1,4-xylosyltransferase IRX10L	26.366%	Swiss-Prot	weak database homology
`Q9FZJ1`	Arabidopsis thaliana	Probable beta-1,4-xylosyltransferase IRX10	26.179%	Swiss-Prot	weak database homology
`Q6H4N0`	Oryza sativa subsp. japonica	Probable glucuronosyltransferase Os02g0520750	25.829%	Swiss-Prot	weak database homology
`Q8S1X7`	Oryza sativa subsp. japonica	Probable glucuronosyltransferase Os01g0926700	26.603%	Swiss-Prot	weak database homology

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