Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1031 bp · LXL04_036147|LXL04_036147|OH1004|cDNA
ATGAAGACGCATAACTGTCCGcttttaacaaaacccttttGTTGTTCCTGGAAGAGTGAAGCGATAACGTTCGTCAAAGGAACCCAAACAGGATGAACCAAGAACTTCTTCTCTCATGGCGTCCTCGACTCTGTCTCCCCTTTCCCATAAGCATACCAAAACCCACCACTGTCCTTGTTCAACCAATCCGAGCAACTCTTCAAGCCTCTATCGACGAAAAATCAATAGGTTTAACGGCGAAAGAGAAAAGGGAGCTGAGA...
939 bp · LXL04_036147|LXL04_036147|OH1004|CDS
ATGAACCAAGAACTTCTTCTCTCATGGCGTCCTCGACTCTGTCTCCCCTTTCCCATAAGCATACCAAAACCCACCACTGTCCTTGTTCAACCAATCCGAGCAACTCTTCAAGCCTCTATCGACGAAAAATCAATAGGTTTAACGGCGAAAGAGAAAAGGGAGCTGAGAAACGTGAAAAGAGAGGAAAACAAATCTTACAATTGGAGGGAAGACGTGGAAGAAAAGCTACTGAAGAAACCCAAGAAGCAGTTCAACTCTTG...
Protein
Download Protein FASTA312 aa · LXL04_036147|LXL04_036147|OH1004|PROTEIN
MNQELLLSWRPRLCLPFPISIPKPTTVLVQPIRATLQASIDEKSIGLTAKEKRELRNVKREENKSYNWREDVEEKLLKKPKKQFNSWKEELNLDKLAVMGPQWWIVKVSRARGKDTVERMMQGLAKNFPDAEFKVFDAAVHEKTKLKSGKISVKPKPLYPGCVFLHCILNRELHNFIREDCEGVGGFIGRMVGNTKRSINKPRPVSAADMEEIFKEVKEKQEATDKAFEEQQQLEILDQTSPDKKVSKNRSRKPSGPVLG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036147 |
|---|---|
| TK1151 ID | TkA04G071390 |
| OH-1004 ID | LXL04_036147 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036147 |
|---|---|
| Location | Chr08:36661442-36662765 (+) |
| Description | Similar to nusG: Transcription termination/antitermination protein NusG (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006353 DNA-templated transcription termination Biological Process GO:0006354 DNA-templated transcription elongation Biological Process GO:0031564 transcription antitermination Biological Process GO:0032784 regulation of DNA-templated transcription elongation Biological Process GO:0005829 cytosol Cellular Component |
| KEGG gene cross-reference | bsu:BSU01010 cje:Cj0473 pae:PA4275 pmu:PM1744 tma:TM0453 tmi:THEMA_02425 tmm:Tmari_0450 tmw:THMA_0463 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00467.36KOW260-289 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_036147 | PF00467.36 | KOW | 260 | 289 | 4.8e-07 | 30.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.