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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_036062
Reference: OH-1004 Chr: Chr08 Coordinates: 34897527-34900618 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1983 bp · LXL04_036062|LXL04_036062|OH1004|cDNA

ATGGCCGAATTGCCCAAAACCCTTATCAGCAAACACCTCCTGAAACTTCTCAAAGCCGAAAAAGACCCAATCTCAGCTCTCTCCCTCTTCGACTCTGCCCTCCAGCAGCCAAATTACTCTCCAACCCCTACCGTCTTTCACCACATTCTCCGTCGTATTTCACAGTCTCCAAAACTCCTACCTCAAGTGGCGCAAGTTGTAAATTTGATTCAATCCACGAAATGCATCTGCTCCGAAGATATCCCGTTGATTGTTATCAA...

CDS

Download CDS FASTA

1983 bp · LXL04_036062|LXL04_036062|OH1004|CDS

ATGGCCGAATTGCCCAAAACCCTTATCAGCAAACACCTCCTGAAACTTCTCAAAGCCGAAAAAGACCCAATCTCAGCTCTCTCCCTCTTCGACTCTGCCCTCCAGCAGCCAAATTACTCTCCAACCCCTACCGTCTTTCACCACATTCTCCGTCGTATTTCACAGTCTCCAAAACTCCTACCTCAAGTGGCGCAAGTTGTAAATTTGATTCAATCCACGAAATGCATCTGCTCCGAAGATATCCCGTTGATTGTTATCAA...

Protein

Download Protein FASTA

660 aa · LXL04_036062|LXL04_036062|OH1004|PROTEIN

MAELPKTLISKHLLKLLKAEKDPISALSLFDSALQQPNYSPTPTVFHHILRRISQSPKLLPQVAQVVNLIQSTKCICSEDIPLIVIKAYSSNAMVDHALDHFQRMAEIFGCEPGIRSYNTLLNALSESNQFNRADLFYKNFRRMGVFPNLETYNILIKILCKKKQFDKANEMLNWMSERGMVPDVFSYGTLINGLAKSGDMTSALKLFDEMSERGVTPDVMCYNILIDGLFKKGNHFEANNVWERLVNSSSVYPNVATYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_036062
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_036062
LocationChr08:34897527-34900618 (-)
DescriptionSimilar to At3g09060: Pentatricopeptide repeat-containing protein At3g09060
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g09060 Pentatricopeptide repeat-containing protein At3g09060. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At1g74580 Putative pentatricopeptide repeat-containing protein At1g74580. No verified direct reference in this release
At1g63130 Pentatricopeptide repeat-containing protein At1g63130, mitochondrial. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036062 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G09060
ath:AT3G53700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.852
Rank 1 · LXL04_036062 · OH-1004
Plastid0.059
Rank 2 · LXL04_036062 · OH-1004
Nucleus0.051
Rank 3 · LXL04_036062 · OH-1004
Cytoplasm0.036
Rank 4 · LXL04_036062 · OH-1004
Cell membrane0.011
Rank 5 · LXL04_036062 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N11-174 aa
PF17177.11PPR_long20-134 aa
PF13041.13PPR_2113-162 aa
PF17177.11PPR_long138-234 aa
PF13812.13PPR_3140-193 aa
PF12854.14PPR_1144-176 aa
PF13041.13PPR_2148-197 aa
PF01535.27PPR152-180 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_036062PF29070.1MSC6_N111742.4e-40139.5
LXL04_036062PF17177.11PPR_long201347.2e-31107.9
LXL04_036062PF13041.13PPR_21131621.1e-126413.6
LXL04_036062PF17177.11PPR_long1382347.2e-31107.9
LXL04_036062PF13812.13PPR_31401931.1e-54183.0
LXL04_036062PF12854.14PPR_11441767.7e-120391.0
LXL04_036062PF13041.13PPR_21481971.1e-126413.6
LXL04_036062PF01535.27PPR1521802.2e-91294.6
LXL04_036062PF13812.13PPR_31752281.1e-54183.0
LXL04_036062PF12854.14PPR_11792127.7e-120391.0
LXL04_036062PF13041.13PPR_21832321.1e-126413.6
LXL04_036062PF01535.27PPR1862162.2e-91294.6
LXL04_036062PF29070.1MSC6_N1912802.4e-40139.5
LXL04_036062PF17177.11PPR_long1923447.2e-31107.9
LXL04_036062PF12854.14PPR_12142447.7e-120391.0
LXL04_036062PF13041.13PPR_22182461.1e-126413.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SS81Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0906048.507%Swiss-Protmoderate database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic29.516%Swiss-Protweak database homology
Q9CA58Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g7458027.697%Swiss-Protweak database homology
Q9CAN0Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63130, mitochondrial29.515%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial30.508%Swiss-Protmoderate database homology

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