LXL04_036034 | RubberDandelionOmics

Gene overview

LXL04_036034

Reference: OH-1004 Chr: Chr08 Coordinates: 34471791-34472414 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

624 bp · LXL04_036034|LXL04_036034|OH1004|cDNA

ATGCTTTCTACTCAACAACAATCACCATCTTTCTTACTAGATAGAATCATCACAACCACCACGAGTGGCGGCGCCAGCGGTTGCGGAACTACCATGTCAGGACCATGCGCCACCAGTCCGGTTCCTGACTCCGTCGCCAGGTACCATACCCACCCAGTCGGCCCAGACCAGTGCTGTTCCGCCGTGATCCAACAGATTAACGCTCCGATCTCCACCGTGTGGTCCGTCGTCCGCCGCTTCGATAACCCACAAGCCTACAA...

CDS

Download CDS FASTA

624 bp · LXL04_036034|LXL04_036034|OH1004|CDS

ATGCTTTCTACTCAACAACAATCACCATCTTTCTTACTAGATAGAATCATCACAACCACCACGAGTGGCGGCGCCAGCGGTTGCGGAACTACCATGTCAGGACCATGCGCCACCAGTCCGGTTCCTGACTCCGTCGCCAGGTACCATACCCACCCAGTCGGCCCAGACCAGTGCTGTTCCGCCGTGATCCAACAGATTAACGCTCCGATCTCCACCGTGTGGTCCGTCGTCCGCCGCTTCGATAACCCACAAGCCTACAA...

Protein

Download Protein FASTA

207 aa · LXL04_036034|LXL04_036034|OH1004|PROTEIN

MLSTQQQSPSFLLDRIITTTTSGGASGCGTTMSGPCATSPVPDSVARYHTHPVGPDQCCSAVIQQINAPISTVWSVVRRFDNPQAYKHFVKSCNVLVGNGDVGTLREIHVISGLPAARSTERLEILDDEQHVMSFSVVGGDHRLANYRSVTTLHPTPAGNGTVVVESYVVDIPPGNTNEETCVFVDTIVKCNLQSLAQIAENKLRLK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036034`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036034

Location Chr08:34471791-34472414 (-)

Description Similar to PYL4: Abscisic acid receptor PYL4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38310`	Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition.	No verified direct reference in this release
`At5g05440`	Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition.	No verified direct reference in this release
`At2g40330`	Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition.	No verified direct reference in this release
`At5g53160`	Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition.	Closely related receptor complexes differ in their ABA selectivity and sensitivity.2010 · DOI: 10.1111/j.1365-313x.2009.04025.x The nuclear interactor PYL8/RCAR3 of Fagus sylvatica FsPP2C1 is a positive regulator of abscisic acid signaling in seeds and stress.2010 · DOI: 10.1104/pp.109.146381
`At1g01360`	Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition.	Regulators of PP2C phosphatase activity function as abscisic acid sensors.2009 · DOI: 10.1126/science.1172408

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036034 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0004864 protein phosphatase inhibitor activity Molecular Function

GO:0010427 abscisic acid binding Molecular Function

KEGG gene cross-reference

ath:AT1G01360

ath:AT2G38310

ath:AT2G40330

ath:AT5G05440

ath:AT5G53160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.558

Rank 1 · LXL04_036034 · OH-1004

Nucleus0.456

Rank 2 · LXL04_036034 · OH-1004

Cell membrane0.140

Rank 3 · LXL04_036034 · OH-1004

Endoplasmic reticulum0.061

Rank 4 · LXL04_036034 · OH-1004

Plastid0.055

Rank 5 · LXL04_036034 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10604.16Polyketide_cyc264-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036034	`PF10604.16`	Polyketide_cyc2	64	201	9.8e-19	68.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80920`	Arabidopsis thaliana	Abscisic acid receptor PYL4	80.000%	Swiss-Prot	strong database homology
`Q9FLB1`	Arabidopsis thaliana	Abscisic acid receptor PYL5	68.553%	Swiss-Prot	strong database homology
`Q8S8E3`	Arabidopsis thaliana	Abscisic acid receptor PYL6	62.573%	Swiss-Prot	strong database homology
`Q9FGM1`	Arabidopsis thaliana	Abscisic acid receptor PYL8	56.604%	Swiss-Prot	strong database homology
`Q84MC7`	Arabidopsis thaliana	Abscisic acid receptor PYL9	50.276%	Swiss-Prot	strong database homology

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