RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_035985
Reference: OH-1004 Chr: Chr08 Coordinates: 33439974-33446342 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4215 bp · LXL04_035985|LXL04_035985|OH1004|cDNA

ATGGCATTGGGAGATTTGATGGAGTCTAGGTTTTCGCAATCGCAGTCGTCAATGGTGGCGATGGTGTCTAATCACCTCGACGGGTATTCGAATTTGCAACATTCTAATTTGAATCCAACTGTTGTTCTTCAAGACGGAGTAGTGGCTGGTAATAGGGATAGAGATTCTTCTTCTGATTCAGTAGTTGCAGTGCAGAGGAGGGAGAATCACATCAACAGGGAAAATAGTGATAGGGAAAGGGAAGATTCCGAAACTGTTGC...

CDS

Download CDS FASTA

4215 bp · LXL04_035985|LXL04_035985|OH1004|CDS

ATGGCATTGGGAGATTTGATGGAGTCTAGGTTTTCGCAATCGCAGTCGTCAATGGTGGCGATGGTGTCTAATCACCTCGACGGGTATTCGAATTTGCAACATTCTAATTTGAATCCAACTGTTGTTCTTCAAGACGGAGTAGTGGCTGGTAATAGGGATAGAGATTCTTCTTCTGATTCAGTAGTTGCAGTGCAGAGGAGGGAGAATCACATCAACAGGGAAAATAGTGATAGGGAAAGGGAAGATTCCGAAACTGTTGC...

Protein

Download Protein FASTA

1404 aa · LXL04_035985|LXL04_035985|OH1004|PROTEIN

MALGDLMESRFSQSQSSMVAMVSNHLDGYSNLQHSNLNPTVVLQDGVVAGNRDRDSSSDSVVAVQRRENHINRENSDREREDSETVASTTSYGVGNGNAVVTGITATSMAYLPQNIVLSELRHDAFEACTPSGPAESGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKTLSFQYERWQPKAKYKIQLDPTVEEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTSNGEIWF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_035985
TK1151 IDTkA04G088220
OH-1004 IDLXL04_035985
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_035985
LocationChr08:33439974-33446342 (+)
DescriptionSimilar to RAPTOR1: Regulatory-associated protein of TOR 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g08850 Probable component of the plant TOR kinase pathway that recruits substrates for TOR.
Arabidopsis TARGET OF RAPAMYCIN interacts with RAPTOR, which regulates the activity of S6 kinase in response to osmotic stress signals.2006 · DOI: 10.1105/tpc.105.035931
At5g01770 Probable component of the plant TOR kinase pathway. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0110000 Component of TORC1 complex, which is an essential cell growth regulator that controls plant development. No verified direct reference in this release
Os11g0109933 Component of TORC1 complex, which is an essential cell growth regulator that controls plant development. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035985 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000045 autophagosome assembly Biological Process
GO:0001558 regulation of cell growth Biological Process
GO:0001932 regulation of protein phosphorylation Biological Process
GO:0001938 positive regulation of endothelial cell proliferation Biological Process
GO:0002181 cytoplasmic translation Biological Process
GO:0006974 DNA damage response Biological Process
GO:0008361 regulation of cell size Biological Process
GO:0009267 cellular response to starvation Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010492 maintenance of shoot apical meristem identity Biological Process
GO:0010506 regulation of autophagy Biological Process
KEGG gene cross-reference
ath:AT3G08850
ath:AT5G01770
dosa:Os11g0109933
dosa:Os12g0110000
osa:136354644
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.620
Rank 1 · LXL04_035985 · OH-1004
Nucleus0.201
Rank 2 · LXL04_035985 · OH-1004
Golgi apparatus0.187
Rank 3 · LXL04_035985 · OH-1004
Lysosome / Vacuole0.146
Rank 4 · LXL04_035985 · OH-1004
Cell membrane0.110
Rank 5 · LXL04_035985 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14538.12Raptor_N149-300 aa
PF24817.2WD40_WDHD1_1st1088-1267 aa
PF23381.2Beta-prop_IFT122_1st1094-1260 aa
PF24814.2WD40_Prp191095-1261 aa
PF25173.2Beta-prop_WDR3_1st1096-1215 aa
PF25175.2Beta-prop_WDR51096-1260 aa
PF24796.2WDR551139-1350 aa
PF25174.2Beta-prop_THOC31140-1351 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_035985PF14538.12Raptor_N1493002.3e-71239.2
LXL04_035985PF24817.2WD40_WDHD1_1st108812678.2e-1142.3
LXL04_035985PF23381.2Beta-prop_IFT122_1st109412604.3e-1556.5
LXL04_035985PF24814.2WD40_Prp19109512611.2e-1868.0
LXL04_035985PF25173.2Beta-prop_WDR3_1st109612154e-1969.7
LXL04_035985PF25175.2Beta-prop_WDR5109612605.7e-1969.2
LXL04_035985PF24796.2WDR55113913506.7e-0832.7
LXL04_035985PF25174.2Beta-prop_THOC3114013512.5e-1970.1
LXL04_035985PF24807.2WD40_CDC20-Fz118413943.4e-1453.6
LXL04_035985PF23098.2Beta-prop_NOL10_N118613585.3e-0833.1
LXL04_035985PF25391.2WD40_Gbeta118613969.1e-0728.9
LXL04_035985PF25173.2Beta-prop_WDR3_1st119613964e-1969.7
LXL04_035985PF25171.2Beta-prop_WDR36-Utp21_1st120513483.7e-1040.4
LXL04_035985PF23381.2Beta-prop_IFT122_1st128913964.3e-1556.5
LXL04_035985PF25175.2Beta-prop_WDR5129113965.7e-1969.2
LXL04_035985PF24814.2WD40_Prp19129113961.2e-1868.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93YQ1Arabidopsis thalianaRegulatory-associated protein of TOR 171.368%Swiss-Protstrong database homology
Q9LZW9Arabidopsis thalianaRegulatory-associated protein of TOR 266.972%Swiss-Protstrong database homology
Q0IQN5Oryza sativa subsp. japonicaRegulatory-associated protein of TOR 270.709%Swiss-Protstrong database homology
C7J8E5Oryza sativa subsp. japonicaRegulatory-associated protein of TOR 170.349%Swiss-Protstrong database homology

JBrowse

View in Genome Browser