Gene Card
Gene overview
cDNA / CDS / Protein Sequences
975 bp · LXL04_035873|LXL04_035873|OH1004|cDNA
ATGTCCACCGTCTTCATCGCCGTTCAATGCTTCCAATGCTCCACTATGCAGGCATCAACTCCTCTCAATTTAGACAAACAAGTGAAGCAGCGGAAGAAAAGCAGCAACAAATGGAGCTGCGTCATATGTAACGAGAAGCAGTCGGTTCGGAAGGTGTTTTCCCAGGGCTCCATGGCTAAAGACGTTCGGAAATTCGTGCAGAGCTTCAACATGTCACGTCAATTCGTCGAACAACAGCAGGAGTTGCTAGAAGAAACCCT...
975 bp · LXL04_035873|LXL04_035873|OH1004|CDS
ATGTCCACCGTCTTCATCGCCGTTCAATGCTTCCAATGCTCCACTATGCAGGCATCAACTCCTCTCAATTTAGACAAACAAGTGAAGCAGCGGAAGAAAAGCAGCAACAAATGGAGCTGCGTCATATGTAACGAGAAGCAGTCGGTTCGGAAGGTGTTTTCCCAGGGCTCCATGGCTAAAGACGTTCGGAAATTCGTGCAGAGCTTCAACATGTCACGTCAATTCGTCGAACAACAGCAGGAGTTGCTAGAAGAAACCCT...
Protein
Download Protein FASTA324 aa · LXL04_035873|LXL04_035873|OH1004|PROTEIN
MSTVFIAVQCFQCSTMQASTPLNLDKQVKQRKKSSNKWSCVICNEKQSVRKVFSQGSMAKDVRKFVQSFNMSRQFVEQQQELLEETLDQEQIENQTVKKRTDWSEYIEPDINDVGIDDDEVKVALFDLNLSSTGTKEVSNSKMHLTDYRSHVTGELCEPNVVTELPKPLFKKPNLRANYSASGLDREDDEPLRKPVFGKRIVNKKINDSDKELRTVKENSKSYNDKKIGASSNWGEYYETQHHDNADYNPAYKRSACTDD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_035873 |
|---|---|
| TK1151 ID | TkA04G101040 |
| OH-1004 ID | LXL04_035873 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 89.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_035873 |
|---|---|
| Location | Chr08:31084566-31085967 (-) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006281 DNA repair Biological Process GO:0006974 DNA damage response Biological Process GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process GO:0010212 response to ionizing radiation Biological Process GO:0045860 positive regulation of protein kinase activity Biological Process GO:0071168 protein localization to chromatin Biological Process GO:1905168 positive regulation of double-strand break repair via homologous recombination Biological Process GO:2001032 regulation of double-strand break repair via nonhomologous end joining Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0003682 chromatin binding Molecular Function |
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15749.11MRNIP8-98 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_035873 | PF15749.11 | MRNIP | 8 | 98 | 2.4e-14 | 54.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.