LXL04_035871 | RubberDandelionOmics

Gene overview

LXL04_035871

Reference: OH-1004 Chr: Chr08 Coordinates: 31080510-31081992 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

717 bp · LXL04_035871|LXL04_035871|OH1004|cDNA

ATGGCTCGAATTTTATCGAAATCCACTCGTCAGATATACAATCAATACATACTCCAACCACATCATAATGCTGTCTCAGTTCGCTTCTATGCCAAAGAAGCTATCCCTAAAGGACTAAAGGGTGATGAAATGTTGAAGGGTATTTTCTTCGATGTAAAGAAGAAATTTGAGACAGCAATTGGGATTCTCCGAAAAGAAAAAATCACAATTGACCCTGAAGATCCTGCAGCCGTTTCTCAGTATGCTAACGTCATGAAAAC...

CDS

Download CDS FASTA

717 bp · LXL04_035871|LXL04_035871|OH1004|CDS

ATGGCTCGAATTTTATCGAAATCCACTCGTCAGATATACAATCAATACATACTCCAACCACATCATAATGCTGTCTCAGTTCGCTTCTATGCCAAAGAAGCTATCCCTAAAGGACTAAAGGGTGATGAAATGTTGAAGGGTATTTTCTTCGATGTAAAGAAGAAATTTGAGACAGCAATTGGGATTCTCCGAAAAGAAAAAATCACAATTGACCCTGAAGATCCTGCAGCCGTTTCTCAGTATGCTAACGTCATGAAAAC...

Protein

Download Protein FASTA

238 aa · LXL04_035871|LXL04_035871|OH1004|PROTEIN

MARILSKSTRQIYNQYILQPHHNAVSVRFYAKEAIPKGLKGDEMLKGIFFDVKKKFETAIGILRKEKITIDPEDPAAVSQYANVMKTVREKADLFSESQRIQYTIKTRTEGIEDARSYLLALKEIRLKRGLVDELGAEGMMMDALEKVEKDLKKPLMRNDKKGMALLMTEFEKINQKLGIRKQDLPKYEEQLELKIAKAQLEELKKEAHEAMDTQKKRDEFKDEEMVDVKSLDIRNFI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035871`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035871

Location Chr08:31080510-31081992 (+)

Description Similar to At2g21870: Probable ATP synthase 24 kDa subunit, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21870`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035871 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0050897 cobalt ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G21870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.945

Rank 1 · LXL04_035871 · OH-1004

Nucleus0.056

Rank 2 · LXL04_035871 · OH-1004

Cytoplasm0.049

Rank 3 · LXL04_035871 · OH-1004

Cell membrane0.015

Rank 4 · LXL04_035871 · OH-1004

Extracellular0.008

Rank 5 · LXL04_035871 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15704.11Mt_ATP_synt31-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035871	`PF15704.11`	Mt_ATP_synt	31	217	2.3e-77	259.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJ12`	Arabidopsis thaliana	Probable ATP synthase 24 kDa subunit, mitochondrial	68.776%	Swiss-Prot	strong database homology

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