LXL04_035862 | RubberDandelionOmics

Gene overview

LXL04_035862

Reference: OH-1004 Chr: Chr08 Coordinates: 30882544-30883755 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

933 bp · LXL04_035862|LXL04_035862|OH1004|cDNA

ATGGTTTATTTGAGTCAGCAGTCCATACTCCAGCGAATCCACAAACAAGATTACAACCTCTACAGCTGTCGGAGTCACCACTACAGATCTGATTCAAAATCACGCACTCATACATCAGTTGTATTTGTATACTCATTCGTAGGTGCCGAGCTAGTTGTGATGGTGTTTTGGGAAGGGTATGTGAGTGATGAAGTGATGGGCACATTTGCCCCAATTGTGGTCTACTGGCTGTACGCGGGTTTTTTCCAGTTGCTACCTCC...

CDS

Download CDS FASTA

933 bp · LXL04_035862|LXL04_035862|OH1004|CDS

ATGGTTTATTTGAGTCAGCAGTCCATACTCCAGCGAATCCACAAACAAGATTACAACCTCTACAGCTGTCGGAGTCACCACTACAGATCTGATTCAAAATCACGCACTCATACATCAGTTGTATTTGTATACTCATTCGTAGGTGCCGAGCTAGTTGTGATGGTGTTTTGGGAAGGGTATGTGAGTGATGAAGTGATGGGCACATTTGCCCCAATTGTGGTCTACTGGCTGTACGCGGGTTTTTTCCAGTTGCTACCTCC...

Protein

Download Protein FASTA

310 aa · LXL04_035862|LXL04_035862|OH1004|PROTEIN

MVYLSQQSILQRIHKQDYNLYSCRSHHYRSDSKSRTHTSVVFVYSFVGAELVVMVFWEGYVSDEVMGTFAPIVVYWLYAGFFQLLPPLDNYRLHTRKEEDAKNSVPLKSVVKGVLLQQLVQAVVAHILFLVTSETGLVGTEVQPSLMIQLIQIIIAMFVMDTWQYFVHRYMHINKFLYRHIHSQHHKLVVPYAIGALYNHPLEGLLLDTVGGAISFLVSGMTARTAVIFFCFAVVKTVDDHCGLWLPGNLFHLFFQNNTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035862`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035862

Location Chr08:30882544-30883755 (+)

Description Similar to GL1-9: Very-long-chain aldehyde decarbonylase GL1-9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14290`	Involved in sphingolipid trihydroxy long-chain base (4- hydroxysphinganine) biosynthesis.	Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis.2008 · DOI: 10.1105/tpc.107.057851
`At1g69640`	Involved in sphingolipid trihydroxy long-chain base (4- hydroxysphinganine) biosynthesis.	Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis.2008 · DOI: 10.1105/tpc.107.057851

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0627700`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release
`UniProt: B8B4W4`	Aldehyde decarbonylase involved in the conversion of aldehydes to alkanes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035862 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006675 mannosyl-inositol phosphorylceramide metabolic process Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0030148 sphingolipid biosynthetic process Biological Process

GO:0046520 sphingoid biosynthetic process Biological Process

GO:0051999 mannosyl-inositol phosphorylceramide biosynthetic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0042284 sphingolipid delta-4 desaturase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14290

ath:AT1G69640

dosa:Os07g0627700

osa:4343979

spo:2541225

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.837

Rank 1 · LXL04_035862 · OH-1004

Nucleus0.101

Rank 2 · LXL04_035862 · OH-1004

Cytoplasm0.074

Rank 3 · LXL04_035862 · OH-1004

Golgi apparatus0.061

Rank 4 · LXL04_035862 · OH-1004

Cell membrane0.050

Rank 5 · LXL04_035862 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04116.20FA_hydroxylase154-289 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035862	`PF04116.20`	FA_hydroxylase	154	289	5.2e-24	85.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9AST3`	Arabidopsis thaliana	Sphinganine C4-monooxygenase 2	64.427%	Swiss-Prot	strong database homology
`Q8VYI1`	Arabidopsis thaliana	Sphinganine C4-monooxygenase 1	66.800%	Swiss-Prot	strong database homology
`Q0D4G3`	Oryza sativa subsp. japonica	Very-long-chain aldehyde decarbonylase GL1-9	73.462%	Swiss-Prot	strong database homology
`B8B4W4`	Oryza sativa subsp. indica	Very-long-chain aldehyde decarbonylase GL1-9	73.462%	Swiss-Prot	strong database homology

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