LXL04_035781 | RubberDandelionOmics

Gene overview

LXL04_035781

Reference: OH-1004 Chr: Chr08 Coordinates: 28644141-28645837 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

873 bp · LXL04_035781|LXL04_035781|OH1004|cDNA

ATGGCAGAATCGATTTCAACAGCATACACATTTTCACCCAAACATCCCCCACGTAGGAGCACATTGCCGGTTACTCCAGAACAACCAAAGATCAAACAAACCCAGCAAACGAAATTCAGTAATGTTTTTGTTCTTCCACCTTACTGCCAAAAGATTATCGCAGAGCTTCTTGGAACATATATCTTGATTTTTGCAGGATGTGGGTCGGCACTTGTTGATAGAGATCGATCTTTAACAATCTTAGGGATCGCAATGGTGTG...

CDS

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873 bp · LXL04_035781|LXL04_035781|OH1004|CDS

ATGGCAGAATCGATTTCAACAGCATACACATTTTCACCCAAACATCCCCCACGTAGGAGCACATTGCCGGTTACTCCAGAACAACCAAAGATCAAACAAACCCAGCAAACGAAATTCAGTAATGTTTTTGTTCTTCCACCTTACTGCCAAAAGATTATCGCAGAGCTTCTTGGAACATATATCTTGATTTTTGCAGGATGTGGGTCGGCACTTGTTGATAGAGATCGATCTTTAACAATCTTAGGGATCGCAATGGTGTG...

Protein

Download Protein FASTA

290 aa · LXL04_035781|LXL04_035781|OH1004|PROTEIN

MAESISTAYTFSPKHPPRRSTLPVTPEQPKIKQTQQTKFSNVFVLPPYCQKIIAELLGTYILIFAGCGSALVDRDRSLTILGIAMVWGLSLMTLIYTIGHISGAHFNPAVSIAFAITRRLPLIYLPMYVVSQLLGSVLACLTLKILFNHQQDTLPTLTRFSNPTTNLEAFLWEFIITFVLMFAINGAATDDRSSKELAGVAIGGTLMFNVIIAGPITGASMNPARSIGPAVVANEYKNLWIYIIATIVGAITASLIYSLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035781`
TK1151 ID	TkA04G109390
OH-1004 ID	LXL04_035781
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035781

Location Chr08:28644141-28645837 (+)

Description Similar to Nodulin-26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18910`	Water channel probably required to promote glycerol permeability and water transport across cell membranes.	Functional identification of the glycerol permease activity of Arabidopsis thaliana NLM1 and NLM2 proteins by heterologous expression in Saccharomyces cerevisiae.2000 · DOI: 10.1016/s0014-5793(00)02027-5
`At4g19030`	Water channel probably required to promote glycerol permeability and water transport across cell membranes.	Functional identification of the glycerol permease activity of Arabidopsis thaliana NLM1 and NLM2 proteins by heterologous expression in Saccharomyces cerevisiae.2000 · DOI: 10.1016/s0014-5793(00)02027-5
`At5g37810`	Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0232900`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035781 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009877 nodulation Biological Process

GO:0015700 arsenite transport Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0046685 response to arsenic-containing substance Biological Process

GO:0080170 hydrogen peroxide transmembrane transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0043661 peribacteroid membrane Cellular Component

GO:0015105 arsenite transmembrane transporter activity Molecular Function

GO:0015250 water channel activity Molecular Function

GO:0015267 channel activity Molecular Function

KEGG gene cross-reference

ath:AT4G18910

ath:AT4G19030

ath:AT5G37810

dosa:Os02g0232900

gmx:547904

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.779

Rank 1 · LXL04_035781 · OH-1004

Cytoplasm0.140

Rank 2 · LXL04_035781 · OH-1004

Endoplasmic reticulum0.068

Rank 3 · LXL04_035781 · OH-1004

Lysosome / Vacuole0.056

Rank 4 · LXL04_035781 · OH-1004

Mitochondrion0.052

Rank 5 · LXL04_035781 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230.26MIP49-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035781	`PF00230.26`	MIP	49	257	7e-64	216.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LFP7`	Arabidopsis thaliana	Aquaporin NIP1-2	51.271%	Swiss-Prot	strong database homology
`Q8VZW1`	Arabidopsis thaliana	Aquaporin NIP1-1	47.791%	Swiss-Prot	moderate database homology
`Q9FIZ9`	Arabidopsis thaliana	Putative aquaporin NIP4-1	47.297%	Swiss-Prot	moderate database homology
`Q40746`	Oryza sativa subsp. japonica	Aquaporin NIP1-1	48.230%	Swiss-Prot	moderate database homology

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