LXL04_035698 | RubberDandelionOmics

Gene overview

LXL04_035698

Reference: OH-1004 Chr: Chr08 Coordinates: 27335712-27342045 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_035698|LXL04_035698|OH1004|cDNA

ATGCAAGCCTTCCTCTTCCACCATAGAcagttttcttttcttctttcccTTTTACTTCAGTTGCTCCAATCGCACTGCAATGATTTAAATCAGTCACCATGTCCTTTAGGACAACGTTGTAGTGTGCAAGAAGGTGTAGTGCCAGCTGTCATAGTGTTTGGAGACTCGGTAGTAGATACAGGAAACAACAATAACCTAGAAACAATTTTCAAGGTGAATTATCCTCCGTATGGGAAAGACTTTTATGGTGGTCAACCCAC...

CDS

Download CDS FASTA

1107 bp · LXL04_035698|LXL04_035698|OH1004|CDS

ATGCAAGCCTTCCTCTTCCACCATAGACAGTTTTCTTTTCTTCTTTCCCTTTTACTTCAGTTGCTCCAATCGCACTGCAATGATTTAAATCAGTCACCATGTCCTTTAGGACAACGTTGTAGTGTGCAAGAAGGTGTAGTGCCAGCTGTCATAGTGTTTGGAGACTCGGTAGTAGATACAGGAAACAACAATAACCTAGAAACAATTTTCAAGGTGAATTATCCTCCGTATGGGAAAGACTTTTATGGTGGTCAACCCAC...

Protein

Download Protein FASTA

368 aa · LXL04_035698|LXL04_035698|OH1004|PROTEIN

MQAFLFHHRQFSFLLSLLLQLLQSHCNDLNQSPCPLGQRCSVQEGVVPAVIVFGDSVVDTGNNNNLETIFKVNYPPYGKDFYGGQPTGRFSNGKVPPDLIVEELGIKQVLPPYLGPSLPIEDLRTGVNFASGGGGYDPLTSELASVISLSGQIELFKEYLEKVKLMAGEKVVNTILSEGLFVVATGSNDVTNTYFNNPLRRYHFDFDSYTRLMVDSASSFFQDLYNLGVRRIGVFSLPPIGCLPSQRTLIGGIQRECVEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035698`
TK1151 ID	TkA04G114950
OH-1004 ID	LXL04_035698
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035698

Location Chr08:27335712-27342045 (-)

Description Similar to EXL3: GDSL esterase/lipase EXL3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75900`	GDSL esterase/lipase EXL3.	No verified direct reference in this release
`At1g75880`	GDSL esterase/lipase EXL1.	No verified direct reference in this release
`At3g14820`	GDSL esterase/lipase At3g14820.	No verified direct reference in this release
`UniProt: Q9FHW9`	GDSL esterase/lipase At5g42170.	No verified direct reference in this release
`At1g75890`	GDSL esterase/lipase EXL2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035698 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016746 acyltransferase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G75880

ath:AT1G75890

ath:AT1G75900

ath:AT3G14820

ath:AT5G42170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.279

Rank 1 · LXL04_035698 · OH-1004

Lysosome / Vacuole0.276

Rank 2 · LXL04_035698 · OH-1004

Cytoplasm0.159

Rank 3 · LXL04_035698 · OH-1004

Endoplasmic reticulum0.157

Rank 4 · LXL04_035698 · OH-1004

Cell membrane0.063

Rank 5 · LXL04_035698 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL50-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035698	`PF00657.29`	Lipase_GDSL	50	357	9.1e-32	111.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94CH6`	Arabidopsis thaliana	GDSL esterase/lipase EXL3	54.829%	Swiss-Prot	strong database homology
`Q94CH8`	Arabidopsis thaliana	GDSL esterase/lipase EXL1	50.670%	Swiss-Prot	strong database homology
`Q9LH73`	Arabidopsis thaliana	GDSL esterase/lipase At3g14820	51.077%	Swiss-Prot	strong database homology
`Q9FHW9`	Arabidopsis thaliana	GDSL esterase/lipase At5g42170	49.538%	Swiss-Prot	moderate database homology
`Q94CH7`	Arabidopsis thaliana	GDSL esterase/lipase EXL2	50.299%	Swiss-Prot	strong database homology

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