Gene Card
Gene overview
cDNA / CDS / Protein Sequences
597 bp · LXL04_035660|LXL04_035660|OH1004|cDNA
ATGGTTCCAAGCTCACCAGCATTTCTCAATATCCTCGCGATTCAAAGATTACTACAAGATTCATTACGAAAAATGGCGAACCCAAAGGTCTTCTTCGACATACTAATTGGAAAAATGAAAGCCGGACGAATAGTCATGGAGCTATTCGCTGACGTCACCCCAAAAACCGCCGAAAACTTCCGGGCACTCTGCACCGGTGAAAAAGGGCTCGGAATTTCCGGGAAACCACTCCACTACAAAGGTTCAGCCTTCCATAGAAT...
597 bp · LXL04_035660|LXL04_035660|OH1004|CDS
ATGGTTCCAAGCTCACCAGCATTTCTCAATATCCTCGCGATTCAAAGATTACTACAAGATTCATTACGAAAAATGGCGAACCCAAAGGTCTTCTTCGACATACTAATTGGAAAAATGAAAGCCGGACGAATAGTCATGGAGCTATTCGCTGACGTCACCCCAAAAACCGCCGAAAACTTCCGGGCACTCTGCACCGGTGAAAAAGGGCTCGGAATTTCCGGGAAACCACTCCACTACAAAGGTTCAGCCTTCCATAGAAT...
Protein
Download Protein FASTA198 aa · LXL04_035660|LXL04_035660|OH1004|PROTEIN
MVPSSPAFLNILAIQRLLQDSLRKMANPKVFFDILIGKMKAGRIVMELFADVTPKTAENFRALCTGEKGLGISGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGAKFADENFNIKHMGPGTLSMANAGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYSVVKEMEKCGSDGGTTSSKVVIEDCGEVKEK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_035660 |
|---|---|
| TK1151 ID | TkA06G062630 |
| OH-1004 ID | LXL04_035660 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 87.879Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_035660 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:26624555-26625679 (+) | |||||||||
| Description | Similar to CYP19-3: Peptidyl-prolyl cis-trans isomerase CYP19-3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006457 protein folding Biological Process GO:0007165 signal transduction Biological Process GO:0009414 response to water deprivation Biological Process GO:0009737 response to abscisic acid Biological Process GO:0010555 response to mannitol Biological Process GO:0061083 regulation of protein refolding Biological Process GO:1901002 positive regulation of response to salt stress Biological Process GO:1902074 response to salt Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005794 Golgi apparatus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G16600 ath:AT3G56070 gmx:106795232 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00160.27Pro_isomerase38-193 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_035660 | PF00160.27 | Pro_isomerase | 38 | 193 | 1.1e-49 | 169.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.