LXL04_035658 | RubberDandelionOmics

Gene overview

LXL04_035658

Reference: OH-1004 Chr: Chr08 Coordinates: 26547118-26549917 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2331 bp · LXL04_035658|LXL04_035658|OH1004|cDNA

ATGAGCTCGATTTTCGTCTCACGATTTCCATTCCTCATTTCTGGATTCCAAATGTCGAAAAGTTTAGTATTTGGAGTCTTGATTGCTTCTTTGTTTCTATCAGTTTCGTTAGCTAACGATAACGAATTCGCTCACTGTCACTGTGATGATGAAGGATCATGGAATGCACATATAATCGAAAGCCAAAGAGTAAGCGATTTCTTGATAGCAATCGCGTATTTTTCAATCCCACTCGAATTACTTTACTTTCTTAGTTGTTC...

CDS

Download CDS FASTA

2331 bp · LXL04_035658|LXL04_035658|OH1004|CDS

ATGAGCTCGATTTTCGTCTCACGATTTCCATTCCTCATTTCTGGATTCCAAATGTCGAAAAGTTTAGTATTTGGAGTCTTGATTGCTTCTTTGTTTCTATCAGTTTCGTTAGCTAACGATAACGAATTCGCTCACTGTCACTGTGATGATGAAGGATCATGGAATGCACATATAATCGAAAGCCAAAGAGTAAGCGATTTCTTGATAGCAATCGCGTATTTTTCAATCCCACTCGAATTACTTTACTTTCTTAGTTGTTC...

Protein

Download Protein FASTA

776 aa · LXL04_035658|LXL04_035658|OH1004|PROTEIN

MSSIFVSRFPFLISGFQMSKSLVFGVLIASLFLSVSLANDNEFAHCHCDDEGSWNAHIIESQRVSDFLIAIAYFSIPLELLYFLSCSNVPFKWVLVQFIAFIVLCGLTHLINGWGYYGNQTFQLMMALTVAKLLTALVSCATAITLLTLIPLLLKFKVRELFLKQNVLELDQEVGIMKKQKEAGWHVRMLTHEIRKSLDRHTILYTTLVELSNTLVLQNCAVWMLNDSKSEMNLTHELRPNSSGYHSSIPKNDPDVLHIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035658`
TK1151 ID	TkA06G063040
OH-1004 ID	LXL04_035658
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 97.809 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035658

Location Chr08:26547118-26549917 (+)

Description Similar to EIN4: Protein EIN4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04580`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release
`At3g23150`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0169100`	Ethylene receptor related to bacterial two-component regulators.	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice.2009 · DOI: 10.1105/tpc.108.065391
`UniProt: Q8H1X1`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release
`UniProt: Q6T5K2`	Ethylene receptor related to bacterial two-component regulators.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035658 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009723 response to ethylene Biological Process

GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:2000904 regulation of starch metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0000155 phosphorelay sensor kinase activity Molecular Function

GO:0004673 protein histidine kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G04580

ath:AT3G23150

dosa:Os04g0169100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.374

Rank 1 · LXL04_035658 · OH-1004

Golgi apparatus0.166

Rank 2 · LXL04_035658 · OH-1004

Nucleus0.141

Rank 3 · LXL04_035658 · OH-1004

Cytoplasm0.139

Rank 4 · LXL04_035658 · OH-1004

Cell membrane0.138

Rank 5 · LXL04_035658 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25487.2ETR1_N58-155 aa

PF01590.33GAF199-346 aa

PF00512.32HisKA383-447 aa

PF00072.31Response_reg650-761 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035658	`PF25487.2`	ETR1_N	58	155	6.8e-41	139.6
LXL04_035658	`PF01590.33`	GAF	199	346	1.1e-08	36.4
LXL04_035658	`PF00512.32`	HisKA	383	447	2.8e-11	44.0
LXL04_035658	`PF00072.31`	Response_reg	650	761	1.6e-21	77.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZTP3`	Arabidopsis thaliana	Protein EIN4	59.470%	Swiss-Prot	strong database homology
`Q0WPQ2`	Arabidopsis thaliana	Ethylene receptor 2	52.020%	Swiss-Prot	strong database homology
`Q7XX84`	Oryza sativa subsp. japonica	Ethylene receptor 2	53.889%	Swiss-Prot	strong database homology
`Q8H1X1`	Oryza sativa subsp. indica	Ethylene receptor 2	53.611%	Swiss-Prot	strong database homology
`Q6T5K2`	Oryza sativa subsp. indica	Ethylene receptor 3	49.600%	Swiss-Prot	moderate database homology

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