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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_035643
Reference: OH-1004 Chr: Chr08 Coordinates: 26226901-26229690 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2712 bp · LXL04_035643|LXL04_035643|OH1004|cDNA

ATGATTCGTTGGGCAGGTAACGACTTGCCCATCATCAGCTCCCCTATTTTGCCCAGACTTTTACATGGGACCTTCtacctgttcgatgaaatgcctcagAGAACTCAAACCTCTAACGCTATTGGGTTTTTCGATGTTCTGGATCTTGTGGAGTTATGCAAAGTAAAACCCAACATTACAAACATACTAAATGTCCATGCCATAGCATTTAAGCTCGGTGTTCTCTCTCATCTCCCCACTTCCACGTCTCTTATTATAGC...

CDS

Download CDS FASTA

2712 bp · LXL04_035643|LXL04_035643|OH1004|CDS

ATGATTCGTTGGGCAGGTAACGACTTGCCCATCATCAGCTCCCCTATTTTGCCCAGACTTTTACATGGGACCTTCTACCTGTTCGATGAAATGCCTCAGAGAACTCAAACCTCTAACGCTATTGGGTTTTTCGATGTTCTGGATCTTGTGGAGTTATGCAAAGTAAAACCCAACATTACAAACATACTAAATGTCCATGCCATAGCATTTAAGCTCGGTGTTCTCTCTCATCTCCCCACTTCCACGTCTCTTATTATAGC...

Protein

Download Protein FASTA

903 aa · LXL04_035643|LXL04_035643|OH1004|PROTEIN

MIRWAGNDLPIISSPILPRLLHGTFYLFDEMPQRTQTSNAIGFFDVLDLVELCKVKPNITNILNVHAIAFKLGVLSHLPTSTSLIIAYSKAGHYPSSLSLFGEISCKDVVLWNAMIKTTIENGLFTNSISFFVQMLNEGIKFDSVTLLIVISALSTLTNSLLYLQAVHSLALMLGLLSDCNLCNALINAHAKFGDFKSSEIIFMESKVKDKLSWNSMISGCLRNHHPEKSLWYFKKMVSLGTQVDDVSLSCAISASNSLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_035643
TK1151 IDTkA04G116980
OH-1004 IDLXL04_035643
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 71.318
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_035643
LocationChr08:26226901-26229690 (+)
DescriptionSimilar to PCMP-E2: Pentatricopeptide repeat-containing protein At4g19220, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g19220 Pentatricopeptide repeat-containing protein At4g19220, mitochondrial. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At1g69350 Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial. No verified direct reference in this release
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At4g21300 Pentatricopeptide repeat-containing protein At4g21300. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035643 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G69350
ath:AT4G13650
ath:AT4G19220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.636
Rank 1 · LXL04_035643 · OH-1004
Plastid0.199
Rank 2 · LXL04_035643 · OH-1004
Nucleus0.047
Rank 3 · LXL04_035643 · OH-1004
Cytoplasm0.028
Rank 4 · LXL04_035643 · OH-1004
Cell membrane0.005
Rank 5 · LXL04_035643 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2107-155 aa
PF13041.13PPR_2212-254 aa
PF01535.27PPR213-241 aa
PF13041.13PPR_2316-363 aa
PF01535.27PPR318-344 aa
PF01535.27PPR420-446 aa
PF13041.13PPR_2520-552 aa
PF01535.27PPR523-550 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_035643PF13041.13PPR_21071557.1e-65215.6
LXL04_035643PF13041.13PPR_22122547.1e-65215.6
LXL04_035643PF01535.27PPR2132415.9e-69224.3
LXL04_035643PF13041.13PPR_23163637.1e-65215.6
LXL04_035643PF01535.27PPR3183445.9e-69224.3
LXL04_035643PF01535.27PPR4204465.9e-69224.3
LXL04_035643PF13041.13PPR_25205527.1e-65215.6
LXL04_035643PF01535.27PPR5235505.9e-69224.3
LXL04_035643PF13041.13PPR_26236667.1e-65215.6
LXL04_035643PF29070.1MSC6_N6407714.9e-1246.3
LXL04_035643PF01535.27PPR7247505.9e-69224.3
LXL04_035643PF13041.13PPR_27247687.1e-65215.6
LXL04_035643PF13812.13PPR_37257697e-1555.6
LXL04_035643PF20431.5E_motif8378981.1e-0629.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49680Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g19220, mitochondrial43.386%Swiss-Protmoderate database homology
Q9SVP7Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1365029.988%Swiss-Protweak database homology
Q9C507Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g69350, mitochondrial32.219%Swiss-Protmoderate database homology
Q0WN60Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1848532.473%Swiss-Protmoderate database homology
Q9STE1Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g2130030.283%Swiss-Protmoderate database homology

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