LXL04_035559 | RubberDandelionOmics

Gene overview

LXL04_035559

Reference: OH-1004 Chr: Chr08 Coordinates: 24521273-24523385 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1359 bp · LXL04_035559|LXL04_035559|OH1004|cDNA

ATGGCTCGATCAACAAACGCCGAATCGCCTCCGATCGGCGAAGGGAGTAATAACATTAACAACGGTGATTCCGCGGCCAACGTCGCCACGGAAAATTCTCCCACCACGCCTGCCGCCGTGAACTCTCCGGGGACCGGTGAAGACCCGACGAAATCAAGCGAATTCACTCCGAATGGAAGGCGGAGCAAGAAACCGAAGCACGACTCTAGCGCAGGTGGAGATCACCGGAAGGAGCGGGAGGAGTGGAGTGATACTGCTAT...

CDS

Download CDS FASTA

1359 bp · LXL04_035559|LXL04_035559|OH1004|CDS

ATGGCTCGATCAACAAACGCCGAATCGCCTCCGATCGGCGAAGGGAGTAATAACATTAACAACGGTGATTCCGCGGCCAACGTCGCCACGGAAAATTCTCCCACCACGCCTGCCGCCGTGAACTCTCCGGGGACCGGTGAAGACCCGACGAAATCAAGCGAATTCACTCCGAATGGAAGGCGGAGCAAGAAACCGAAGCACGACTCTAGCGCAGGTGGAGATCACCGGAAGGAGCGGGAGGAGTGGAGTGATACTGCTAT...

Protein

Download Protein FASTA

452 aa · LXL04_035559|LXL04_035559|OH1004|PROTEIN

MARSTNAESPPIGEGSNNINNGDSAANVATENSPTTPAAVNSPGTGEDPTKSSEFTPNGRRSKKPKHDSSAGGDHRKEREEWSDTAIAILLDSYTDKYMALNRSNLRGKDWEVVAELVAEGCDKHSRKSIEQCKNKIDNLKKRLKLETQRMESNGGSVSNWVWFKKMEKVFGNAVTKSGGGAASDDDKSIGVSSAQRPRRSARLAPDSTLVLNNIKGTTKAKWKRVVFKVSGTALSGSGQSIDPKVALQIAEEVATASRC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035559`
TK1151 ID	TkA04G123750
OH-1004 ID	LXL04_035559
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035559

Location Chr08:24521273-24523385 (+)

Description Similar to pyrH: Uridylate kinase (Synechococcus sp. (strain CC9902)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18680`	Catalyzes the reversible phosphorylation of UMP to UDP.	A protein related to prokaryotic UMP kinases is involved in psaA/B transcript accumulation in Arabidopsis.2009 · DOI: 10.1007/s11103-008-9433-2 PUMPKIN, the Sole Plastid UMP Kinase, Associates with Group II Introns and Alters Their Metabolism.2019 · DOI: 10.1104/pp.18.00687

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035559 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006225 UDP biosynthetic process Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0031425 chloroplast RNA processing Biological Process

GO:0042548 regulation of photosynthesis, light reaction Biological Process

GO:0044210 'de novo' CTP biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0033862 UMP kinase activity Molecular Function

KEGG gene cross-reference

ana:alr1207

ath:AT3G18680

ava:Ava_0628

sye:Syncc9902_1648

ter:Tery_3779

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.807

Rank 1 · LXL04_035559 · OH-1004

Cytoplasm0.157

Rank 2 · LXL04_035559 · OH-1004

Cell membrane0.072

Rank 3 · LXL04_035559 · OH-1004

Endoplasmic reticulum0.033

Rank 4 · LXL04_035559 · OH-1004

Plastid0.031

Rank 5 · LXL04_035559 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13837.13Myb_DNA-bind_479-169 aa

PF00696.34AA_kinase224-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035559	`PF13837.13`	Myb_DNA-bind_4	79	169	2.2e-13	51.1
LXL04_035559	`PF00696.34`	AA_kinase	224	430	1.5e-26	94.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSA9`	Arabidopsis thaliana	Uridylate kinase PUMPKIN, chloroplastic	56.400%	Swiss-Prot	moderate database homology

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