LXL04_035461 | RubberDandelionOmics

Gene overview

LXL04_035461

Reference: OH-1004 Chr: Chr08 Coordinates: 22994931-22996583 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

789 bp · LXL04_035461|LXL04_035461|OH1004|cDNA

ATGACGGGAAAAGCAAAGCCCAAGAAGCACACCGCAAAGGAAATCGCTGCGAAGGTGGACGCAACGATGACCAACAGAGGCGGTGGTAAGGCCGGAGTTGCTGATCGCACCGGCCAGATTTCGTCAACGAAAAATCCTCATCTAGGCGAGTTTGTTGCGAGATTTCGATCATATATAAAGAGGGATCATGCGGGTGGAAATGAGAAGATCAAAGAGTTGGTTCCAGGGATTAAAGTCTATGGAGGTAATGCCGATAATGT...

CDS

Download CDS FASTA

789 bp · LXL04_035461|LXL04_035461|OH1004|CDS

ATGACGGGAAAAGCAAAGCCCAAGAAGCACACCGCAAAGGAAATCGCTGCGAAGGTGGACGCAACGATGACCAACAGAGGCGGTGGTAAGGCCGGAGTTGCTGATCGCACCGGCCAGATTTCGTCAACGAAAAATCCTCATCTAGGCGAGTTTGTTGCGAGATTTCGATCATATATAAAGAGGGATCATGCGGGTGGAAATGAGAAGATCAAAGAGTTGGTTCCAGGGATTAAAGTCTATGGAGGTAATGCCGATAATGT...

Protein

Download Protein FASTA

262 aa · LXL04_035461|LXL04_035461|OH1004|PROTEIN

MTGKAKPKKHTAKEIAAKVDATMTNRGGGKAGVADRTGQISSTKNPHLGEFVARFRSYIKRDHAGGNEKIKELVPGIKVYGGNADNVKGCTNKVENGDKLSLGDSINILSLHTPCHTKGHISYYVTGKEEEDPAVFTGDTLFVAGCGKFFEGTAEQMHESLCVTLASLPKPTRVYCGHEYTVKNLQFAQTVEPDNEKISEKLSWAQKQRQSGLPTILSTIEEELETNPFMRSDLPQVQERVGCKSAVEAMREIRQRKDNW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035461`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035461

Location Chr08:22994931-22996583 (-)

Description Similar to GLX2-2: Hydroxyacylglutathione hydrolase cytoplasmic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10850`	Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	The metal ion requirements of Arabidopsis thaliana Glx2-2 for catalytic activity.2010 · DOI: 10.1007/s00775-009-0593-6

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035461 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Biological Process

GO:0019853 L-ascorbic acid biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004416 hydroxyacylglutathione hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G10850

bta:509274

dre:336977

gga:416537

xtr:100216043

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.593

Rank 1 · LXL04_035461 · OH-1004

Nucleus0.358

Rank 2 · LXL04_035461 · OH-1004

Mitochondrion0.172

Rank 3 · LXL04_035461 · OH-1004

Cell membrane0.089

Rank 4 · LXL04_035461 · OH-1004

Endoplasmic reticulum0.068

Rank 5 · LXL04_035461 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16123.12HAGH_C179-260 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035461	`PF16123.12`	HAGH_C	179	260	1.9e-29	102.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O24496`	Arabidopsis thaliana	Hydroxyacylglutathione hydrolase cytoplasmic	66.116%	Swiss-Prot	strong database homology

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