LXL04_035355 | RubberDandelionOmics

Gene overview

LXL04_035355

Reference: OH-1004 Chr: Chr08 Coordinates: 20951548-20953360 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

942 bp · LXL04_035355|LXL04_035355|OH1004|cDNA

ATGGAGACACTATCTTCATCAACTTCAATGTCTTTTCCAAGAGAACCAGCCAATTATGACGAGATTTCTATGCACGAAACCTTGATATTTTCAGAAAGTCTAAAGGATTTAACGAATTTGAGAAAGCAATTGTACTCGGCTGCTGAATACTTCGAACTATCATACACCAATGACGACCAAAAGCAAATGGTGGTTGACACGTTAAAAGATTATGCCATCAAGGCTATAGTCAACACAGTTGACCATTTGGGAGCTGTTTC...

CDS

Download CDS FASTA

942 bp · LXL04_035355|LXL04_035355|OH1004|CDS

ATGGAGACACTATCTTCATCAACTTCAATGTCTTTTCCAAGAGAACCAGCCAATTATGACGAGATTTCTATGCACGAAACCTTGATATTTTCAGAAAGTCTAAAGGATTTAACGAATTTGAGAAAGCAATTGTACTCGGCTGCTGAATACTTCGAACTATCATACACCAATGACGACCAAAAGCAAATGGTGGTTGACACGTTAAAAGATTATGCCATCAAGGCTATAGTCAACACAGTTGACCATTTGGGAGCTGTTTC...

Protein

Download Protein FASTA

313 aa · LXL04_035355|LXL04_035355|OH1004|PROTEIN

METLSSSTSMSFPREPANYDEISMHETLIFSESLKDLTNLRKQLYSAAEYFELSYTNDDQKQMVVDTLKDYAIKAIVNTVDHLGAVSNKVDNIFDDKVEEVSGTELRVSCIEQRIKTCHGHFDHEGISQQKLLLKIPKYHKRYVLPDGKMMKDGNVTILKHEECILDDEHDLRENTNDFLGLREVVQATIIEKPATLVREEPSPPPSPQPHDAVSFVDKVTRKDIEKKSVSPPRFPQLHSGSLSSRSNTPNSRSQTSFPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035355`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035355

Location Chr08:20951548-20953360 (+)

Description Similar to ABIL3: Protein ABIL3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24310`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release
`At3g49290`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release
`At5g42030`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0551800`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release
`Os01g0236400`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035355 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010090 trichome morphogenesis Biological Process

GO:0048364 root development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

KEGG gene cross-reference

ath:AT3G49290

ath:AT5G24310

ath:AT5G42030

dosa:Os01g0236400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.545

Rank 1 · LXL04_035355 · OH-1004

Nucleus0.349

Rank 2 · LXL04_035355 · OH-1004

Cell membrane0.197

Rank 3 · LXL04_035355 · OH-1004

Endoplasmic reticulum0.053

Rank 4 · LXL04_035355 · OH-1004

Lysosome / Vacuole0.049

Rank 5 · LXL04_035355 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27594.2ABI30-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035355	`PF27594.2`	ABI	30	95	5e-13	49.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NMC6`	Arabidopsis thaliana	Protein ABIL3	55.183%	Swiss-Prot	strong database homology
`Q9M3A3`	Arabidopsis thaliana	Protein ABIL2	52.548%	Swiss-Prot	strong database homology
`Q9FHY1`	Arabidopsis thaliana	Protein ABIL4	37.134%	Swiss-Prot	moderate database homology
`Q5JKN2`	Oryza sativa subsp. japonica	Putative protein ABIL2	40.566%	Swiss-Prot	moderate database homology
`Q5NB83`	Oryza sativa subsp. japonica	Probable protein ABIL3	40.065%	Swiss-Prot	moderate database homology

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