LXL04_035346 | RubberDandelionOmics

Gene overview

LXL04_035346

Reference: OH-1004 Chr: Chr08 Coordinates: 20684588-20685821 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · LXL04_035346|LXL04_035346|OH1004|cDNA

ATGAATTTCCTCAAAAATTTCCTGTTATTGTGCCTTCTTTCAGTAGCTTTCTGCCAACAGCATTCGAACACAGATCCTCACATACTTCCAAGGCCTTTGATCATCGAACTTCCAGAAAACTTGGAACCCCGATGCGATAGTTCGATTGAAGATACTCGATTGCGGTGTACGGGCTGGAGAGTTGCGGTTGAGGCAAATAATCTGAGTCCATGGAAGACAATCCCGGAGGAATGTATCGATTACGTGAAGGACTACATGTT...

CDS

Download CDS FASTA

807 bp · LXL04_035346|LXL04_035346|OH1004|CDS

ATGAATTTCCTCAAAAATTTCCTGTTATTGTGCCTTCTTTCAGTAGCTTTCTGCCAACAGCATTCGAACACAGATCCTCACATACTTCCAAGGCCTTTGATCATCGAACTTCCAGAAAACTTGGAACCCCGATGCGATAGTTCGATTGAAGATACTCGATTGCGGTGTACGGGCTGGAGAGTTGCGGTTGAGGCAAATAATCTGAGTCCATGGAAGACAATCCCGGAGGAATGTATCGATTACGTGAAGGACTACATGTT...

Protein

Download Protein FASTA

268 aa · LXL04_035346|LXL04_035346|OH1004|PROTEIN

MNFLKNFLLLCLLSVAFCQQHSNTDPHILPRPLIIELPENLEPRCDSSIEDTRLRCTGWRVAVEANNLSPWKTIPEECIDYVKDYMLGRSYEIDLQTVSNEAARFARSVDLKGDGMDVWIFDIDETLLSNLPYYAEHGYGLEIFDNVQFDKWVLEGVAPTIEPSLKLYNEVLGLGFKIFLLTGRREDKRNITTSNLIEAGFRNWDRLILRANEDHGKTAVAFKSDKRKEIMEEGFRILGNSGDQWSDLIGSAVSVRSFKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035346`
TK1151 ID	TkA04G141340
OH-1004 ID	LXL04_035346
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035346

Location Chr08:20684588-20685821 (-)

Description Similar to APS1: Acid phosphatase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24770`	May function as somatic storage protein during early seedling development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035346 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0006952 defense response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009625 response to insect Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0046688 response to copper ion Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0045735 nutrient reservoir activity Molecular Function

KEGG gene cross-reference

ath:AT5G24770

gmx:547820

gmx:547821

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.315

Rank 1 · LXL04_035346 · OH-1004

Endoplasmic reticulum0.264

Rank 2 · LXL04_035346 · OH-1004

Cytoplasm0.194

Rank 3 · LXL04_035346 · OH-1004

Golgi apparatus0.127

Rank 4 · LXL04_035346 · OH-1004

Extracellular0.127

Rank 5 · LXL04_035346 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03767.21Acid_phosphat_B51-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035346	`PF03767.21`	Acid_phosphat_B	51	267	7.5e-80	268.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82122`	Arabidopsis thaliana	Vegetative storage protein 2	39.720%	Swiss-Prot	moderate database homology

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