LXL04_035344 | RubberDandelionOmics

Gene overview

LXL04_035344

Reference: OH-1004 Chr: Chr08 Coordinates: 20671417-20675739 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2610 bp · LXL04_035344|LXL04_035344|OH1004|cDNA

ATGGTGAACACCAGAGCCAAAGTCAGGAAAATCCAGAATATCATAAATCTCTGGTTCTCAGAGGCTGCCATGGCGGACTCCAATCATCTCCCCACAGAGTCGGGAGCTCTGATTGGTTCAAACGATGATCTATTAATCGAAATCCTTCGCCGGCTTCCTGTTACCTCTGTTCTTCGATTCAAATCTGTATCCAAACACTGGCGATCCGTTTTAAGTCACCGCCGTTTCACCCTCCTATACAATAACGAATCGTCTTCTCC...

CDS

Download CDS FASTA

2610 bp · LXL04_035344|LXL04_035344|OH1004|CDS

ATGGTGAACACCAGAGCCAAAGTCAGGAAAATCCAGAATATCATAAATCTCTGGTTCTCAGAGGCTGCCATGGCGGACTCCAATCATCTCCCCACAGAGTCGGGAGCTCTGATTGGTTCAAACGATGATCTATTAATCGAAATCCTTCGCCGGCTTCCTGTTACCTCTGTTCTTCGATTCAAATCTGTATCCAAACACTGGCGATCCGTTTTAAGTCACCGCCGTTTCACCCTCCTATACAATAACGAATCGTCTTCTCC...

Protein

Download Protein FASTA

869 aa · LXL04_035344|LXL04_035344|OH1004|PROTEIN

MVNTRAKVRKIQNIINLWFSEAAMADSNHLPTESGALIGSNDDLLIEILRRLPVTSVLRFKSVSKHWRSVLSHRRFTLLYNNESSSPGLFALNLYIPFDIENRSTPGFRYLDFFPERCGVRIVQSCNGLLLCCSYRGDERVRKYYVFNPTTKQFAVIPSVLGGMAVRESIYFMGLAFHQTDCVHYKLVCFHRANHGFHGTKPDDVFNIQIYSSDTGKWKISDALFTLSTPYYASFNYIVYWNQAIYWAPCCVNPLYFKLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035344`
TK1151 ID	TkA04G141370
OH-1004 ID	LXL04_035344
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 51.554 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035344

Location Chr08:20671417-20675739 (+)

Description Similar to At5g07610: F-box protein At5g07610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07610`	F-box protein At5g07610.	No verified direct reference in this release
`At5g49610`	F-box protein At5g49610.	No verified direct reference in this release
`At3g16210`	Putative F-box protein At3g16210.	No verified direct reference in this release
`At4g19940`	F-box protein At4g19940.	No verified direct reference in this release
`At4g04690`	Putative F-box only protein 15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035344 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G16210

ath:AT5G07610

ath:AT5G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.694

Rank 1 · LXL04_035344 · OH-1004

Nucleus0.423

Rank 2 · LXL04_035344 · OH-1004

Cell membrane0.070

Rank 3 · LXL04_035344 · OH-1004

Endoplasmic reticulum0.065

Rank 4 · LXL04_035344 · OH-1004

Lysosome / Vacuole0.031

Rank 5 · LXL04_035344 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box42-77 aa

PF12937.13F-box-like42-73 aa

PF07734.19FBA_1121-275 aa

PF24750.2b-prop_At3g26010-like121-346 aa

PF00646.39F-box498-533 aa

PF08268.18FBA_3572-697 aa

PF07734.19FBA_1576-697 aa

PF24750.2b-prop_At3g26010-like578-787 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035344	`PF00646.39`	F-box	42	77	1.3e-15	57.3
LXL04_035344	`PF12937.13`	F-box-like	42	73	1.9e-09	37.9
LXL04_035344	`PF07734.19`	FBA_1	121	275	1.9e-25	90.2
LXL04_035344	`PF24750.2`	b-prop_At3g26010-like	121	346	6.3e-24	85.4
LXL04_035344	`PF00646.39`	F-box	498	533	1.3e-15	57.3
LXL04_035344	`PF08268.18`	FBA_3	572	697	3.8e-12	46.6
LXL04_035344	`PF07734.19`	FBA_1	576	697	1.9e-25	90.2
LXL04_035344	`PF24750.2`	b-prop_At3g26010-like	578	787	6.3e-24	85.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLS0`	Arabidopsis thaliana	F-box protein At5g07610	32.546%	Swiss-Prot	weak database homology
`Q9FGY4`	Arabidopsis thaliana	F-box protein At5g49610	28.475%	Swiss-Prot	weak database homology
`Q9LU24`	Arabidopsis thaliana	Putative F-box protein At3g16210	29.231%	Swiss-Prot	weak database homology
`O49421`	Arabidopsis thaliana	F-box protein At4g19940	26.923%	Swiss-Prot	weak database homology
`Q9S9V1`	Arabidopsis thaliana	Putative F-box only protein 15	24.603%	Swiss-Prot	weak database homology

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