LXL04_035197 | RubberDandelionOmics

Gene overview

LXL04_035197

Reference: OH-1004 Chr: Chr08 Coordinates: 17163234-17172516 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3570 bp · LXL04_035197|LXL04_035197|OH1004|cDNA

ATGGCGTCGAAAAAGCCAGCGGTATGCCATCTGGCCATCTTTACCGCTGGCGAACATGGTGGAGTAACAAAAGGCAGCGGCAAAGTTCATCGGCCTGCCCACGCCGATGGTTTATCTCCACTTTTTGCAGGTCTCACGGGTCTCACAGCAATGGTCACGGGGATAAATAAAAATACTTCATCAAATCGTAGAGGGTCTAGCGCTTCTTCGCAACAAAACGCAGATAGCCCTCCGCAGCAAGAGGGATACCGCCCAACATT...

CDS

Download CDS FASTA

3570 bp · LXL04_035197|LXL04_035197|OH1004|CDS

ATGGCGTCGAAAAAGCCAGCGGTATGCCATCTGGCCATCTTTACCGCTGGCGAACATGGTGGAGTAACAAAAGGCAGCGGCAAAGTTCATCGGCCTGCCCACGCCGATGGTTTATCTCCACTTTTTGCAGGTCTCACGGGTCTCACAGCAATGGTCACGGGGATAAATAAAAATACTTCATCAAATCGTAGAGGGTCTAGCGCTTCTTCGCAACAAAACGCAGATAGCCCTCCGCAGCAAGAGGGATACCGCCCAACATT...

Protein

Download Protein FASTA

1189 aa · LXL04_035197|LXL04_035197|OH1004|PROTEIN

MASKKPAVCHLAIFTAGEHGGVTKGSGKVHRPAHADGLSPLFAGLTGLTAMVTGINKNTSSNRRGSSASSQQNADSPPQQEGYRPTFDPVLYQQQMAFQAWCQTQPQYQYQYQQPQYPTPQYPTPQYQQPQSPQFQTPSPQFQTPSPQFQTPSPLSYTSSPRFEAPSPFTEESTQEVLETQEEVSDSEESNEEEVGRRKGKAVRKNWTNLEEEVLAQAWCGVSEYARYGNDQNAKKFWKHVTRRFNKLLGKCRNYRTFDQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035197`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_035197`
Location	Chr08:17163234-17172516 (+)
Description	Similar to MSP1: Protein MSP1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035197` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000281 mitotic cytokinesis Biological Process GO:0001578 microtubule bundle formation Biological Process GO:0002092 positive regulation of receptor internalization Biological Process GO:0006626 protein targeting to mitochondrion Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0009653 anatomical structure morphogenesis Biological Process GO:0010458 exit from mitosis Biological Process GO:0031117 positive regulation of microtubule depolymerization Biological Process GO:0031468 nuclear membrane reassembly Biological Process GO:0032506 cytokinetic process Biological Process GO:0034214 protein hexamerization Biological Process GO:0045047 protein targeting to ER Biological Process
KEGG gene cross-reference	mmu:67979 rno:309532 sce:YGR028W xla:446560 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.754

Rank 1 · LXL04_035197 · OH-1004

Cytoplasm0.244

Rank 2 · LXL04_035197 · OH-1004

Mitochondrion0.049

Rank 3 · LXL04_035197 · OH-1004

Cell membrane0.040

Rank 4 · LXL04_035197 · OH-1004

Endoplasmic reticulum0.025

Rank 5 · LXL04_035197 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24933.2DUF7751755-815 aa

PF00004.36AAA924-1054 aa

PF17862.8AAA_lid_31078-1119 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035197	`PF24933.2`	DUF7751	755	815	1.5e-30	106.1
LXL04_035197	`PF00004.36`	AAA	924	1054	2.7e-40	138.6
LXL04_035197	`PF17862.8`	AAA_lid_3	1078	1119	1.8e-13	50.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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