LXL04_035033 | RubberDandelionOmics

Gene overview

LXL04_035033

Reference: OH-1004 Chr: Chr08 Coordinates: 11610932-11613693 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1881 bp · LXL04_035033|LXL04_035033|OH1004|cDNA

ATGGCGGCAAGGGTGCAACACTCCCTTCAATTTCAAAGAAACAGCCTCAACACCTTCTTCTTCTCGTCGTCATCGTCTTCTTTTTCGAACTCGATCAACAAAACCCAATTCCGATACCGTTCAAAATGGTTCtcatcgtcttcttcttcttcttccaaaaGGCCAGGAGCCGCTTTATACTGCACTTGCAGTAGCAGTTCTAATTCTACCGATCTAAATTCAACAGCGATGCCGACAAAAGAAGACCCCTTTGTCCTGAC...

CDS

Download CDS FASTA

1881 bp · LXL04_035033|LXL04_035033|OH1004|CDS

ATGGCGGCAAGGGTGCAACACTCCCTTCAATTTCAAAGAAACAGCCTCAACACCTTCTTCTTCTCGTCGTCATCGTCTTCTTTTTCGAACTCGATCAACAAAACCCAATTCCGATACCGTTCAAAATGGTTCTCATCGTCTTCTTCTTCTTCTTCCAAAAGGCCAGGAGCCGCTTTATACTGCACTTGCAGTAGCAGTTCTAATTCTACCGATCTAAATTCAACAGCGATGCCGACAAAAGAAGACCCCTTTGTCCTGAC...

Protein

Download Protein FASTA

626 aa · LXL04_035033|LXL04_035033|OH1004|PROTEIN

MAARVQHSLQFQRNSLNTFFFSSSSSSFSNSINKTQFRYRSKWFSSSSSSSSKRPGAALYCTCSSSSNSTDLNSTAMPTKEDPFVLTTPLYYVNAPPHMGSAYSTIAADAIARFQRLTGKKVIFITGTDEHGEKIATAAAAGGSSPNDHCDTISQSYRALWKDLDISYDKFIRTTDSKHETIVEEFYSKVLSNGDIYRADYEGLYCVNCEEYKDEKELLEDNCCPMHLKPCVARKEDNYFFALSKYQKRLEVILEHNPDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035033`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035033

Location Chr08:11610932-11613693 (-)

Description Similar to OVA1: Methionine--tRNA ligase, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55400`	Methionine--tRNA ligase, chloroplastic/mitochondrial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035033 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006431 methionyl-tRNA aminoacylation Biological Process

GO:0048481 plant ovule development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004825 methionine-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

aae:aq_1257

ana:all0233

ath:AT3G55400

syn:slr0649

tel:tlr0750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.827

Rank 1 · LXL04_035033 · OH-1004

Mitochondrion0.241

Rank 2 · LXL04_035033 · OH-1004

Cytoplasm0.069

Rank 3 · LXL04_035033 · OH-1004

Nucleus0.034

Rank 4 · LXL04_035033 · OH-1004

Peroxisome0.022

Rank 5 · LXL04_035033 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00133.29tRNA-synt_179-295 aa

PF09334.18tRNA-synt_1g85-223 aa

PF01406.26tRNA-synt_1e96-252 aa

PF09334.18tRNA-synt_1g217-443 aa

PF00133.29tRNA-synt_1301-409 aa

PF01406.26tRNA-synt_1e363-423 aa

PF19303.6Anticodon_3466-595 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035033	`PF00133.29`	tRNA-synt_1	79	295	3.6e-26	92.6
LXL04_035033	`PF09334.18`	tRNA-synt_1g	85	223	1.5e-107	360.5
LXL04_035033	`PF01406.26`	tRNA-synt_1e	96	252	2.9e-14	53.9
LXL04_035033	`PF09334.18`	tRNA-synt_1g	217	443	1.5e-107	360.5
LXL04_035033	`PF00133.29`	tRNA-synt_1	301	409	3.6e-26	92.6
LXL04_035033	`PF01406.26`	tRNA-synt_1e	363	423	2.9e-14	53.9
LXL04_035033	`PF19303.6`	Anticodon_3	466	595	2.3e-09	38.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2T9`	Arabidopsis thaliana	Methionine--tRNA ligase, chloroplastic/mitochondrial	75.168%	Swiss-Prot	strong database homology

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