LXL04_034854 | RubberDandelionOmics

Gene overview

LXL04_034854

Reference: OH-1004 Chr: Chr08 Coordinates: 4775538-4779791 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1065 bp · LXL04_034854|LXL04_034854|OH1004|cDNA

ATGAAAAAGACCAAGAACAAAGCATGGGAAGAAGTTAATAAGGGTATGAAACTCTATACAGTATTGAAGATGGGAGGAGATTTCAAAATCCTAAACTTCTTTAGAaTGTGTGGATCGTCAGCTCTACCAGTTCCCGTCATGCAAAGATGGGAGACCATCACAGGACACCGAATATTAGAAAGATACGGCATGACAGAGTTTGTAATGGCACTTTCAGCACTTGGGGGCATTTTTGGAAAATATGGTGGGACTGAAACAGT...

CDS

Download CDS FASTA

1065 bp · LXL04_034854|LXL04_034854|OH1004|CDS

ATGAAAAAGACCAAGAACAAAGCATGGGAAGAAGTTAATAAGGGTATGAAACTCTATACAGTATTGAAGATGGGAGGAGATTTCAAAATCCTAAACTTCTTTAGAATGTGTGGATCGTCAGCTCTACCAGTTCCCGTCATGCAAAGATGGGAGACCATCACAGGACACCGAATATTAGAAAGATACGGCATGACAGAGTTTGTAATGGCACTTTCAGCACTTGGGGGCATTTTTGGAAAATATGGTGGGACTGAAACAGT...

Protein

Download Protein FASTA

354 aa · LXL04_034854|LXL04_034854|OH1004|PROTEIN

MKKTKNKAWEEVNKGMKLYTVLKMGGDFKILNFFRMCGSSALPVPVMQRWETITGHRILERYGMTEFVMALSALGGIFGKYGGTETVQFLGQFGFMADMQQFGFMGLQQFRFAAGLKLIFEESTICKYFSCIISISSSKFFSFFFPDFGLPGFFGMDLDMTALGDEEVIFKPVFELNLLKKRNILSCLYIYKWKQINDCIHKSSKITVTEDTPQPLFTCTLGMIFAYLVPKVCISLIARPETLELLLQFAELELQVAALY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034854`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034854

Location Chr08:4775538-4779791 (-)

Description Similar to AAE13: Malonate--CoA ligase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16170`	Malonate--CoA ligase that catalyzes the formation of malonyl- CoA directly from malonate and CoA.	Malonyl-CoA synthetase, encoded by ACYL ACTIVATING ENZYME13, is essential for growth and development of Arabidopsis.2011 · DOI: 10.1105/tpc.111.086140

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034854 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0035338 long-chain fatty-acyl-CoA biosynthetic process Biological Process

GO:0090410 malonate catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016405 CoA-ligase activity Molecular Function

GO:0031956 medium-chain fatty acid-CoA ligase activity Molecular Function

KEGG gene cross-reference

ath:AT3G16170

bta:509209

hsa:197322

xla:444743

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.413

Rank 1 · LXL04_034854 · OH-1004

Nucleus0.292

Rank 2 · LXL04_034854 · OH-1004

Mitochondrion0.257

Rank 3 · LXL04_034854 · OH-1004

Cell membrane0.115

Rank 4 · LXL04_034854 · OH-1004

Endoplasmic reticulum0.092

Rank 5 · LXL04_034854 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H151`	Arabidopsis thaliana	Malonate--CoA ligase	81.081%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card