LXL04_034847 | RubberDandelionOmics

Gene overview

LXL04_034847

Reference: OH-1004 Chr: Chr08 Coordinates: 4160001-4169523 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1672 bp · LXL04_034847|LXL04_034847|OH1004|cDNA

ATGGATGAGGGCGTCGTTCAAAAGAGGCTAAAAGAGAGATCTTTGGAGATAACACCAACATGGGCAGTGGCAGTGGTGGTGTTTGTGATACTCGCCATATCTATTGCTCTTGAGTACATCCTTCATCGCATAGGCCATTGGCTACATAATAATCACAAGAAAGCACTCAATGAAGCCCTTGAAAAGATCAAAGCAGAATTGATGATTCTAGGGTTCATATCACTGCTGCTAACAGTGGGTCAAGAACCAATCTCTGATAT...

CDS

Download CDS FASTA

1668 bp · LXL04_034847|LXL04_034847|OH1004|CDS

ATGGATGAGGGCGTCGTTCAAAAGAGGCTAAAAGAGAGATCTTTGGAGATAACACCAACATGGGCAGTGGCAGTGGTGGTGTTTGTGATACTCGCCATATCTATTGCTCTTGAGTACATCCTTCATCGCATAGGCCATTGGCTACATAATAATCACAAGAAAGCACTCAATGAAGCCCTTGAAAAGATCAAAGCAGAATTGATGATTCTAGGGTTCATATCACTGCTGCTAACAGTGGGTCAAGAACCAATCTCTGATAT...

Protein

Download Protein FASTA

555 aa · LXL04_034847|LXL04_034847|OH1004|PROTEIN

MDEGVVQKRLKERSLEITPTWAVAVVVFVILAISIALEYILHRIGHWLHNNHKKALNEALEKIKAELMILGFISLLLTVGQEPISDICIPSKVARTWHPCNNTKADNEYYDPCLKKGKVQMVSNYGIHQLHIFIFVLAVVHVLYCLLTLILGRLKMKKWRSWEDETKTVEYQYQHDPERFRFARETTFGRRHLRVWSNSTVLLWIGCFFRQFFASVPKVDYLTLRHGFINTHLPSESQQRFDFHKYISKSLEEDFKVVVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034847`
TK1151 ID	TkA04G204340
OH-1004 ID	LXL04_034847
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034847

Location Chr08:4160001-4169523 (-)

Description Similar to MLO12: MLO-like protein 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39200`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g11310`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g61560`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YD22`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034847 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009620 response to fungus Biological Process

GO:0010150 leaf senescence Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G11310

ath:AT1G61560

ath:AT2G39200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.829

Rank 1 · LXL04_034847 · OH-1004

Cytoplasm0.112

Rank 2 · LXL04_034847 · OH-1004

Endoplasmic reticulum0.101

Rank 3 · LXL04_034847 · OH-1004

Lysosome / Vacuole0.050

Rank 4 · LXL04_034847 · OH-1004

Golgi apparatus0.045

Rank 5 · LXL04_034847 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03094.21Mlo12-107 aa

PF03094.21Mlo108-468 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034847	`PF03094.21`	Mlo	12	107	6.9e-215	714.7
LXL04_034847	`PF03094.21`	Mlo	108	468	6.9e-215	714.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80961`	Arabidopsis thaliana	MLO-like protein 12	58.148%	Swiss-Prot	strong database homology
`Q9SXB6`	Arabidopsis thaliana	MLO-like protein 2	55.763%	Swiss-Prot	strong database homology
`Q94KB7`	Arabidopsis thaliana	MLO-like protein 6	55.574%	Swiss-Prot	strong database homology
`A2YD22`	Oryza sativa subsp. indica	MLO protein homolog 1	47.764%	Swiss-Prot	moderate database homology

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