LXL04_034748 | RubberDandelionOmics

Gene overview

LXL04_034748

Reference: OH-1004 Chr: Chr07 Coordinates: 115718949-115720556 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1536 bp · LXL04_034748|LXL04_034748|OH1004|cDNA

TAGAGAAGTTAAAGAAACTCAAAACCCATCCATATGGAGATCCTATCATTCTTCTCTAATTCGTGGTTTCTTCCCATATCATTACTTGTCTTCCTTCCTTACATCTTCATATACACTATTCGTCGGAAAAGCTCCATTAAGCTTCCACCAGGCCCACAGAGGCTTCCTATAATCGGAAACCTTCACCAAGTGCTCGGCAGCGAAGGTATCCATCAAACCCTATGGAACCTCTCTCAAAAATATGGTCCCGCCATGCTTGT...

CDS

Download CDS FASTA

1503 bp · LXL04_034748|LXL04_034748|OH1004|CDS

ATGGAGATCCTATCATTCTTCTCTAATTCGTGGTTTCTTCCCATATCATTACTTGTCTTCCTTCCTTACATCTTCATATACACTATTCGTCGGAAAAGCTCCATTAAGCTTCCACCAGGCCCACAGAGGCTTCCTATAATCGGAAACCTTCACCAAGTGCTCGGCAGCGAAGGTATCCATCAAACCCTATGGAACCTCTCTCAAAAATATGGTCCCGCCATGCTTGTTCGTTTCGGATCCCAACCTTTCCTTATCATTTC...

Protein

Download Protein FASTA

500 aa · LXL04_034748|LXL04_034748|OH1004|PROTEIN

MEILSFFSNSWFLPISLLVFLPYIFIYTIRRKSSIKLPPGPQRLPIIGNLHQVLGSEGIHQTLWNLSQKYGPAMLVRFGSQPFLIISSSEMAVEVLKTHDQKLCTRPYTESGKRLSFNHMDVAFAPHGDHWRDMRKVLVSEFLGAKRIRLYKNVMESEMESLTRSISLHSLNTTINLEDVILSLVYDVVCKTTFGKSYKGEKFNGRTLKEIVDETLVTTGASFSAIFPTFGWILDELTGWNRRVEKCFTDLDCFLQRVLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034748`
TK1151 ID	TkA08G433330
OH-1004 ID	LXL04_034748
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 95.770 / OH-1004 63.400 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034748

Location Chr07:115718949-115720556 (+)

Description Similar to CYP71CA1: Parthenolide synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57260`	Cytochrome P450 71B10.	No verified direct reference in this release
`At3g26280`	Cytochrome P450 71B4.	No verified direct reference in this release
`At3g26330`	Cytochrome P450 71B37.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034748 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0051762 sesquiterpene biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Molecular Function

GO:0020037 heme binding Molecular Function

GO:0102626 parthenolide synthase activity Molecular Function

GO:0106244 eupatolide synthase activity Molecular Function

KEGG gene cross-reference

ath:AT3G26280

ath:AT3G26330

ath:AT5G57260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.922

Rank 1 · LXL04_034748 · OH-1004

Cell membrane0.044

Rank 2 · LXL04_034748 · OH-1004

Cytoplasm0.032

Rank 3 · LXL04_034748 · OH-1004

Plastid0.031

Rank 4 · LXL04_034748 · OH-1004

Nucleus0.020

Rank 5 · LXL04_034748 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45038-480 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034748	`PF00067.28`	p450	38	480	3.8e-93	313.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVD2`	Arabidopsis thaliana	Cytochrome P450 71B10	41.237%	Swiss-Prot	moderate database homology
`O65786`	Arabidopsis thaliana	Cytochrome P450 71B4	40.891%	Swiss-Prot	moderate database homology
`Q9LIP3`	Arabidopsis thaliana	Cytochrome P450 71B37	41.719%	Swiss-Prot	moderate database homology

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