LXL04_034635 | RubberDandelionOmics

Gene overview

LXL04_034635

Reference: OH-1004 Chr: Chr07 Coordinates: 111527285-111529804 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1980 bp · LXL04_034635|LXL04_034635|OH1004|cDNA

ATGGCTTTTCCAAATTGGGCATTAGTTATTATTGAGTTTTATATTCTTACACATCTCGCCGTTCTCACCATTACGCATGGAGACTCTCAATGCGGAAACCGAGGAACCTTTACGCCCAACAGTACATACGAGAAGCTTCTAGATGATACGTTATCCGTTCTTACTCAACGACCCAATGAAAATGGTTTCTTTACAGCAACTTCAAATTCTTCACAAGTCGGTGAAACCAACACGGTGTATGCCGTTGTACTATGCCTGGG...

CDS

Download CDS FASTA

1980 bp · LXL04_034635|LXL04_034635|OH1004|CDS

ATGGCTTTTCCAAATTGGGCATTAGTTATTATTGAGTTTTATATTCTTACACATCTCGCCGTTCTCACCATTACGCATGGAGACTCTCAATGCGGAAACCGAGGAACCTTTACGCCCAACAGTACATACGAGAAGCTTCTAGATGATACGTTATCCGTTCTTACTCAACGACCCAATGAAAATGGTTTCTTTACAGCAACTTCAAATTCTTCACAAGTCGGTGAAACCAACACGGTGTATGCCGTTGTACTATGCCTGGG...

Protein

Download Protein FASTA

659 aa · LXL04_034635|LXL04_034635|OH1004|PROTEIN

MAFPNWALVIIEFYILTHLAVLTITHGDSQCGNRGTFTPNSTYEKLLDDTLSVLTQRPNENGFFTATSNSSQVGETNTVYAVVLCLGDFEVDRCLACLKSAPERLKTDCPYQKRATGWYFETCMFSYSNTTFDVVDSGDKDVLYFPASGSVNNSDSVNETLGYLFKRLRGTAVDDDYTRKYYSDNTALQNSRGYIRATMQCLPDVSKNICESCLVNASDYLNTSYNGSVDGVVYYGYSCLLKYEIIVGNNIADPPNPSQP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034635`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034635

Location Chr07:111527285-111529804 (-)

Description Similar to CRK14: Cysteine-rich receptor-like protein kinase 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23220`	Cysteine-rich receptor-like protein kinase 14.	No verified direct reference in this release
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g23180`	Cysteine-rich receptor-like protein kinase 10.	No verified direct reference in this release
`At4g23200`	Putative cysteine-rich receptor-like protein kinase 12.	No verified direct reference in this release
`At4g21230`	Cysteine-rich receptor-like protein kinase 27.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034635 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G21230

ath:AT4G23180

ath:AT4G23200

ath:AT4G23220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.881

Rank 1 · LXL04_034635 · OH-1004

Endoplasmic reticulum0.079

Rank 2 · LXL04_034635 · OH-1004

Cytoplasm0.068

Rank 3 · LXL04_034635 · OH-1004

Nucleus0.039

Rank 4 · LXL04_034635 · OH-1004

Lysosome / Vacuole0.025

Rank 5 · LXL04_034635 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung31-129 aa

PF01657.23Stress-antifung155-244 aa

PF00069.32Pkinase338-603 aa

PF07714.24PK_Tyr_Ser-Thr339-604 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034635	`PF01657.23`	Stress-antifung	31	129	2.3e-26	93.1
LXL04_034635	`PF01657.23`	Stress-antifung	155	244	2.3e-26	93.1
LXL04_034635	`PF00069.32`	Pkinase	338	603	6.5e-46	157.6
LXL04_034635	`PF07714.24`	PK_Tyr_Ser-Thr	339	604	8e-52	176.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H199`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 14	38.760%	Swiss-Prot	moderate database homology
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	39.672%	Swiss-Prot	moderate database homology
`Q8GYA4`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 10	39.868%	Swiss-Prot	moderate database homology
`O65472`	Arabidopsis thaliana	Putative cysteine-rich receptor-like protein kinase 12	40.917%	Swiss-Prot	moderate database homology
`O49564`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 27	42.376%	Swiss-Prot	moderate database homology

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