LXL04_034428 | RubberDandelionOmics

Gene overview

LXL04_034428

Reference: OH-1004 Chr: Chr07 Coordinates: 100249265-100250905 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

594 bp · LXL04_034428|LXL04_034428|OH1004|cDNA

ATGGAGTCTGCCCTGACACTCAAACCGGTCATCAACGTCGCTGCCATCTGCGGTTCCCTTCGAAAAGCCTCCTTCAACCAAGGTCTCATCCGTTCCGCCATCGATTTGACCAAGCAATCAGTTGATGGAATGGCTATCGAGCACCTCGACATATCGCCGTTGCCGATGCTTAACACAGATCTCGAGATCGACGGCAAATATCCACCAGCAGTCGAGGTTTTCCGTCAGAAGATTCTTCAATCCGATTGTTTCCTCTTCGC...

CDS

Download CDS FASTA

594 bp · LXL04_034428|LXL04_034428|OH1004|CDS

ATGGAGTCTGCCCTGACACTCAAACCGGTCATCAACGTCGCTGCCATCTGCGGTTCCCTTCGAAAAGCCTCCTTCAACCAAGGTCTCATCCGTTCCGCCATCGATTTGACCAAGCAATCAGTTGATGGAATGGCTATCGAGCACCTCGACATATCGCCGTTGCCGATGCTTAACACAGATCTCGAGATCGACGGCAAATATCCACCAGCAGTCGAGGTTTTCCGTCAGAAGATTCTTCAATCCGATTGTTTCCTCTTCGC...

Protein

Download Protein FASTA

197 aa · LXL04_034428|LXL04_034428|OH1004|PROTEIN

MESALTLKPVINVAAICGSLRKASFNQGLIRSAIDLTKQSVDGMAIEHLDISPLPMLNTDLEIDGKYPPAVEVFRQKILQSDCFLFASPEYNYSITAPLKNAIDWASRPPNVWADKAAAIVSAGGGFGGGRSQYILRQSGVYLDLHFINKPEFFLNAFQSPPKFDDEGNLIDAEAKERLRAVLLALKAFTLRLQSSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034428`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034428

Location Chr07:100249265-100250905 (-)

Description Similar to NQR: NADPH:quinone oxidoreductase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27890`	The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinones involved in detoxification pathways.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0953600`	The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinones involved in detoxification pathways.	No verified direct reference in this release
`Os01g0954000`	The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinones involved in detoxification pathways.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034428 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003955 NAD(P)H dehydrogenase (quinone) activity Molecular Function

GO:0008753 NADPH dehydrogenase (quinone) activity Molecular Function

GO:0010181 FMN binding Molecular Function

GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor Molecular Function

GO:0042802 identical protein binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0050136 NADH dehydrogenase (quinone) (non-electrogenic) activity Molecular Function

GO:0052873 FMN reductase (NADPH) activity Molecular Function

KEGG gene cross-reference

ath:AT3G27890

dosa:Os01g0953600

dosa:Os01g0954000

pae:PA1204

sot:102582514

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.608

Rank 1 · LXL04_034428 · OH-1004

Nucleus0.280

Rank 2 · LXL04_034428 · OH-1004

Mitochondrion0.177

Rank 3 · LXL04_034428 · OH-1004

Peroxisome0.097

Rank 4 · LXL04_034428 · OH-1004

Cell membrane0.054

Rank 5 · LXL04_034428 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03358.21FMN_red12-157 aa

PF02525.23Flavodoxin_215-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034428	`PF03358.21`	FMN_red	12	157	1.8e-37	128.9
LXL04_034428	`PF02525.23`	Flavodoxin_2	15	131	2.3e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LK88`	Arabidopsis thaliana	NADPH:quinone oxidoreductase	72.680%	Swiss-Prot	strong database homology
`Q941Z0`	Oryza sativa subsp. japonica	Probable NADPH:quinone oxidoreductase 1	68.718%	Swiss-Prot	strong database homology
`Q941Y8`	Oryza sativa subsp. japonica	Probable NADPH:quinone oxidoreductase 2	62.371%	Swiss-Prot	strong database homology

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