Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1010 bp · LXL04_034334|LXL04_034334|OH1004|cDNA
CATAATTTCTCCAATATTTGTCAGAGTCTCTGGAAGGTAAAAGTTCTgagaagaaaatgaaaaaagCTACAGGTAACAAGAAAAAAAGAGACAGAGAGCTATCAGAACCTAAAGCAAAGGAAATGGCTTTCTCTGATAGTCAACTTAATGAGAACAACAATGGTGGAATGAGTGATAAAAAGAACAAattgaagaaaaagaaaagaaatagTGAAAATAAGGAAGATAGTGTCCATGAAAATGTTACACATGATAATGCA...
993 bp · LXL04_034334|LXL04_034334|OH1004|CDS
TTGTCAGAGTCTCTGGAAGGTAAAAGTTCTGAGAAGAAAATGAAAAAAGCTACAGGTAACAAGAAAAAAAGAGACAGAGAGCTATCAGAACCTAAAGCAAAGGAAATGGCTTTCTCTGATAGTCAACTTAATGAGAACAACAATGGTGGAATGAGTGATAAAAAGAACAAATTGAAGAAAAAGAAAAGAAATAGTGAAAATAAGGAAGATAGTGTCCATGAAAATGTTACACATGATAATGCAGATCTGGATGGTGTGAA...
Protein
Download Protein FASTA330 aa · LXL04_034334|LXL04_034334|OH1004|PROTEIN
MSESLEGKSSEKKMKKATGNKKKRDRELSEPKAKEMAFSDSQLNENNNGGMSDKKNKLKKKKRNSENKEDSVHENVTHDNADLDGVKSSKKTKKVAKSKKRKSTETPEAILTNIAVCPSPDDVKMSDKKKSKLKKKKNNKQKRKKDDVDENLLHSNESGANSNHQIDKSQSTSKATSLDDEDEVYQISSGDEDETTGMKRWISEYHGSRPGAEVLLQRINDFLVDYWAQKEKERKERESEAAEGGWTVVTHMKGRKKTTD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034334 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034334 |
|---|---|
| Location | Chr07:96776385-96778111 (+) |
| Description | Similar to RRP7A: Ribosomal RNA-processing protein 7 homolog A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000028 ribosomal small subunit assembly Biological Process GO:0006364 rRNA processing Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0061523 cilium disassembly Biological Process GO:1902570 protein localization to nucleolus Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005813 centrosome Cellular Component |
| KEGG gene cross-reference | hsa:27341 mmu:74778 pon:100172751 spo:2541174 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12923.13RRP7208-330 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_034334 | PF12923.13 | RRP7 | 208 | 330 | 6.9e-27 | 94.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.