LXL04_034150 | RubberDandelionOmics

Gene overview

LXL04_034150

Reference: OH-1004 Chr: Chr07 Coordinates: 85738000-85740159 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

708 bp · LXL04_034150|LXL04_034150|OH1004|cDNA

ATGGGCGCCCTTCGTCTTCTTCACATGCGCTGCAACTCGCTGCCATCCCCGCGAGCAGGACTTGAGTTCGACGATTCCGGAATCGTCACTTTTCCTATCGGCGTCCTTCACCATCACTGAGTGACAAAGAAGGTCGGGAAATATGAGATTGGCCGAACCCTTGGTGAAGGCACATTTGCAAAGGTCAAGTTTGCAAAAAACACAGAGACTGGTGAGGCTGTTGCTGTTAAGATTAAGAGAGAGATCTCCATTATGAAGAT...

CDS

Download CDS FASTA

456 bp · LXL04_034150|LXL04_034150|OH1004|CDS

ATGAAGATAGTAAGACATCCTAATATTGTGAGACTTCATGAGGTTCATAAAGGTAAGCTCTCAGAGAAGGAAGCCAGGGGTTACTTCCAACAGCTTATTGATGCAGTTTCCCATTGCCATTCTAAAGGTGTGTTCCATAGAGATTTAAAGCTTTTGGAACCGGACCCAGCTGCCATTTCTGAACCACAACTGCAGGTAGTAGTTCTAGGTGGTGGATCTTTTGGAACATCAATGGCTTCCCATGTTGCAGGTAGAAAGAC...

Protein

Download Protein FASTA

151 aa · LXL04_034150|LXL04_034150|OH1004|PROTEIN

MKIVRHPNIVRLHEVHKGKLSEKEARGYFQQLIDAVSHCHSKGVFHRDLKLLEPDPAAISEPQLQVVVLGGGSFGTSMASHVAGRKTQMEVNMLAGPLTDCFNDSEGCNCTSQADRADREAGSQADRADREGGRNNFCMIIMDFDTTTYKC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034150`
TK1151 ID	TkA01G216190
OH-1004 ID	LXL04_034150
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 64.255 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034150

Location Chr07:85738000-85740159 (-)

Description Similar to CIPK24: CBL-interacting serine/threonine-protein kinase 24

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g35410`	May regulate intracellular Na⁺/K⁺ homeostasis and salt tolerance.	The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3.2000 · DOI: 10.1073/pnas.97.7.3735 Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3.2002 · DOI: 10.1073/pnas.122224699 The protein kinase SOS2 activates the Arabidopsis H(+)/Ca(2+) antiporter CAX1 to integrate calcium transport and salt tolerance.2004 · DOI: 10.1074/jbc.m309084200
`At1g48260`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0606000`	May regulate intracellular Na⁺/K⁺ homeostasis and salt tolerance.	Conservation of the salt overly sensitive pathway in rice.2007 · DOI: 10.1104/pp.106.092635
`Os07g0637000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os01g0536000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034150 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G48260

ath:AT5G35410

dosa:Os01g0536000

dosa:Os06g0606000

dosa:Os07g0637000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479

Rank 1 · LXL04_034150 · OH-1004

Nucleus0.372

Rank 2 · LXL04_034150 · OH-1004

Mitochondrion0.145

Rank 3 · LXL04_034150 · OH-1004

Cell membrane0.103

Rank 4 · LXL04_034150 · OH-1004

Extracellular0.094

Rank 5 · LXL04_034150 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase14-50 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034150	`PF00069.32`	Pkinase	14	50	1e-08	35.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LDI3`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 24	54.054%	Swiss-Prot	weak database homology
`Q94C40`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 17	50.667%	Swiss-Prot	weak database homology
`Q69Q47`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 24	54.054%	Swiss-Prot	weak database homology
`Q0D4B2`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 21	50.000%	Swiss-Prot	weak database homology
`Q5JLD8`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 8	50.000%	Swiss-Prot	weak database homology

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