LXL04_034096 | RubberDandelionOmics

Gene overview

LXL04_034096

Reference: OH-1004 Chr: Chr07 Coordinates: 81630175-81631775 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1191 bp · LXL04_034096|LXL04_034096|OH1004|cDNA

ATGGCATATCGACTTTTGACACCCCTAGAAATAACATTTGAGAAAAGACATTTAGATAGACACCCGGAAGGAGGGAAAGCTTTTGGTTGTTTTGCCATGCATCATGCAATTATTCTTCCGACCTACGATAAATGCTTGCATATCCACAGCTTTTACACACCTCAAGTCTCTCTCCCTAATTGTAAACGTGATATGTCGTTCTCCTTCTCTCCACTGCCTTTAACTAATCCCCAGGAGATACTCCTTGACCTGTCCCCCTT...

CDS

Download CDS FASTA

1191 bp · LXL04_034096|LXL04_034096|OH1004|CDS

ATGGCATATCGACTTTTGACACCCCTAGAAATAACATTTGAGAAAAGACATTTAGATAGACACCCGGAAGGAGGGAAAGCTTTTGGTTGTTTTGCCATGCATCATGCAATTATTCTTCCGACCTACGATAAATGCTTGCATATCCACAGCTTTTACACACCTCAAGTCTCTCTCCCTAATTGTAAACGTGATATGTCGTTCTCCTTCTCTCCACTGCCTTTAACTAATCCCCAGGAGATACTCCTTGACCTGTCCCCCTT...

Protein

Download Protein FASTA

396 aa · LXL04_034096|LXL04_034096|OH1004|PROTEIN

MAYRLLTPLEITFEKRHLDRHPEGGKAFGCFAMHHAIILPTYDKCLHIHSFYTPQVSLPNCKRDMSFSFSPLPLTNPQEILLDLSPFILIHKNGRIERLVGEEILPPSNDPTTGVRSKDVQISPETGLSARLYLPLAEAPEQKKLPVLIYFHGGGFVAATAFSAMFQPYLNKLALEAKTLIISVDYRRAPEHLYPAAFDDSWDAIKWVAAHATMNGDEPWLNKYADFERVFFGGESSGANICHQMGMRIGSGQDMVPFND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034096`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034096

Location Chr07:81630175-81631775 (-)

Description Similar to CXE13: Probable carboxylesterase 13

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48700`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At2g03550`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At3g48690`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At1g47480`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release
`At1g19190`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034096 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016787 hydrolase activity Molecular Function

GO:0106435 carboxylesterase activity Molecular Function

KEGG gene cross-reference

ath:AT1G19190

ath:AT1G47480

ath:AT2G03550

ath:AT3G48690

ath:AT3G48700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.798

Rank 1 · LXL04_034096 · OH-1004

Nucleus0.355

Rank 2 · LXL04_034096 · OH-1004

Endoplasmic reticulum0.069

Rank 3 · LXL04_034096 · OH-1004

Plastid0.048

Rank 4 · LXL04_034096 · OH-1004

Cell membrane0.047

Rank 5 · LXL04_034096 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20434.6BD-FAE140-247 aa

PF07859.20Abhydrolase_3148-372 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034096	`PF20434.6`	BD-FAE	140	247	2e-11	44.5
LXL04_034096	`PF07859.20`	Abhydrolase_3	148	372	6.2e-48	164.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SMM9`	Arabidopsis thaliana	Probable carboxylesterase 13	47.706%	Swiss-Prot	moderate database homology
`Q9ZQ91`	Arabidopsis thaliana	Probable carboxylesterase 7	48.734%	Swiss-Prot	moderate database homology
`Q9SMN0`	Arabidopsis thaliana	Probable carboxylesterase 12	49.221%	Swiss-Prot	moderate database homology
`Q9SX78`	Arabidopsis thaliana	Probable carboxylesterase 2	42.368%	Swiss-Prot	moderate database homology
`Q9LMA7`	Arabidopsis thaliana	Probable carboxylesterase 1	45.312%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card