LXL04_033956 | RubberDandelionOmics

Gene overview

LXL04_033956

Reference: OH-1004 Chr: Chr07 Coordinates: 68884688-68885997 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

609 bp · LXL04_033956|LXL04_033956|OH1004|cDNA

ATGGAGTATGGATGGAAAGTGAATGACAACATTGATTTTGATTGGAAAAAGCTACTACACAAGGAAAAAGAAAACTTCCATCAACTTGAATACTTTAGGGAAGTAAAAAACCGTTCTATGATGTCTGTCATGGGCAATTCAACAAATCTTTTCTGGCACGAAAACACAGTTGGGAAAACCGAACGCCAAAAGCTGATTAACCAACAAGGATGTGTTGTATGGATCACAGGTCTCAGTGGATCAGgAGAAGTAGCAAAACT...

CDS

Download CDS FASTA

609 bp · LXL04_033956|LXL04_033956|OH1004|CDS

ATGGAGTATGGATGGAAAGTGAATGACAACATTGATTTTGATTGGAAAAAGCTACTACACAAGGAAAAAGAAAACTTCCATCAACTTGAATACTTTAGGGAAGTAAAAAACCGTTCTATGATGTCTGTCATGGGCAATTCAACAAATCTTTTCTGGCACGAAAACACAGTTGGGAAAACCGAACGCCAAAAGCTGATTAACCAACAAGGATGTGTTGTATGGATCACAGGTCTCAGTGGATCAGGAGAAGTAGCAAAACT...

Protein

Download Protein FASTA

202 aa · LXL04_033956|LXL04_033956|OH1004|PROTEIN

MEYGWKVNDNIDFDWKKLLHKEKENFHQLEYFREVKNRSMMSVMGNSTNLFWHENTVGKTERQKLINQQGCVVWITGLSGSGEVAKLFADAGLICIASLISPYRKDRDACRAMLTDANFIEAMLLSVFMNMPLEVCEAIDCKGLYKLAKAGKIKGFTGIDDPYEPPLNCEIMIEQKDGVCPTPCDMAGQVVFYLDENGFLHA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033956`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033956

Location Chr07:68884688-68885997 (-)

Description Similar to APK3: Adenylyl-sulfate kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03900`	Catalyzes the synthesis of activated sulfate for the sulfation of secondary metabolites, including the glucosinolates.	Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014
`At2g14750`	Catalyzes the synthesis of activated sulfate.	Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453
`At4g39940`	Catalyzes the synthesis of activated sulfate.	Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453 Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites.2009 · DOI: 10.1105/tpc.109.065581 Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014 Interaction of glucosinolate content of Arabidopsis thaliana mutant lines and feeding and oviposition by generalist and specialist lepidopterans.2013 · DOI: 10.1016/j.phytochem.2012.11.006
`At5g67520`	Catalyzes the phosphorylation of adenosine 5'-phosphosulfate to 3'-phosphoadenylyl sulfate, which is the activated sulfate form for sulfation reactions.	Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033956 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000103 sulfate assimilation Biological Process

GO:0016310 phosphorylation Biological Process

GO:0019344 L-cysteine biosynthetic process Biological Process

GO:0070814 hydrogen sulfide biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0004020 adenylylsulfate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT2G14750

ath:AT3G03900

ath:AT4G39940

ath:AT5G67520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.433

Rank 1 · LXL04_033956 · OH-1004

Nucleus0.297

Rank 2 · LXL04_033956 · OH-1004

Extracellular0.126

Rank 3 · LXL04_033956 · OH-1004

Cell membrane0.092

Rank 4 · LXL04_033956 · OH-1004

Mitochondrion0.086

Rank 5 · LXL04_033956 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01583.27APS_kinase82-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033956	`PF01583.27`	APS_kinase	82	173	5.4e-35	121.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRW7`	Arabidopsis thaliana	Adenylyl-sulfate kinase 3	55.450%	Swiss-Prot	strong database homology
`Q43295`	Arabidopsis thaliana	Adenylyl-sulfate kinase 1, chloroplastic	50.472%	Swiss-Prot	strong database homology
`O49196`	Arabidopsis thaliana	Adenylyl-sulfate kinase 2, chloroplastic	46.569%	Swiss-Prot	moderate database homology
`Q84JF0`	Arabidopsis thaliana	Adenylyl-sulfate kinase 4, chloroplastic	41.509%	Swiss-Prot	moderate database homology

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