LXL04_033916 | RubberDandelionOmics

Gene overview

LXL04_033916

Reference: OH-1004 Chr: Chr07 Coordinates: 65309145-65309776 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

273 bp · LXL04_033916|LXL04_033916|OH1004|cDNA

ATGGCTTCTCTAACACTGAAGACGACCGGTATGGGTTTTTACTTTTTATCAATTCTCATTGAAATCACTGTTTCAATTCTCATTAAGTTAGAAGTGATAGTTAAAGCTTTGAAATGGCTTCAGATGAATATGGATTTGGATGAGGTGGAATGCATACTGTCGATTTTAATATACACGAATATTGTGAAATGGTACTTTGGTCACAAGTACGAAGTGGCAGTTTTAAGCAAACATGATCCATTCTCCAAACATTTTTGCAA...

CDS

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273 bp · LXL04_033916|LXL04_033916|OH1004|CDS

ATGGCTTCTCTAACACTGAAGACGACCGGTATGGGTTTTTACTTTTTATCAATTCTCATTGAAATCACTGTTTCAATTCTCATTAAGTTAGAAGTGATAGTTAAAGCTTTGAAATGGCTTCAGATGAATATGGATTTGGATGAGGTGGAATGCATACTGTCGATTTTAATATACACGAATATTGTGAAATGGTACTTTGGTCACAAGTACGAAGTGGCAGTTTTAAGCAAACATGATCCATTCTCCAAACATTTTTGCAA...

Protein

Download Protein FASTA

90 aa · LXL04_033916|LXL04_033916|OH1004|PROTEIN

MASLTLKTTGMGFYFLSILIEITVSILIKLEVIVKALKWLQMNMDLDEVECILSILIYTNIVKWYFGHKYEVAVLSKHDPFSKHFCNIFS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033916`
TK1151 ID	TkA02G036840
OH-1004 ID	LXL04_033916
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.700
Protein coverage (%)	TK1151 55.963 / OH-1004 67.778 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033916

Location Chr07:65309145-65309776 (-)

Description Similar to EER5: Enhanced ethylene response protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g19560`	Involved in the regulation of ethylene response.	The eer5 mutation, which affects a novel proteasome-related subunit, indicates a prominent role for the COP9 signalosome in resetting the ethylene-signaling pathway in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03521.x Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin.2010 · DOI: 10.1111/j.1365-313x.2009.04048.x

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_033916 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000973 post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery Biological Process

GO:0006368 transcription elongation by RNA polymerase II Biological Process

GO:0006406 mRNA export from nucleus Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0015031 protein transport Biological Process

GO:0016973 poly(A)+ mRNA export from nucleus Biological Process

GO:0045814 negative regulation of gene expression, epigenetic Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G19560

ddi:DDB_G0284241

hsa:55795

mmu:234069

xla:734284

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.476

Rank 1 · LXL04_033916 · OH-1004

Nucleus0.286

Rank 2 · LXL04_033916 · OH-1004

Endoplasmic reticulum0.076

Rank 3 · LXL04_033916 · OH-1004

Mitochondrion0.075

Rank 4 · LXL04_033916 · OH-1004

Peroxisome0.059

Rank 5 · LXL04_033916 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GWE6`	Arabidopsis thaliana	Enhanced ethylene response protein 5	67.857%	Swiss-Prot	moderate database homology

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