LXL04_033795 | RubberDandelionOmics

Gene overview

LXL04_033795

Reference: OH-1004 Chr: Chr07 Coordinates: 58116869-58119655 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · LXL04_033795|LXL04_033795|OH1004|cDNA

TTCTTATGATCTATAATCATTTTGAAGGTGTCCTTTTTGCTTGGAATCATCCCTATATTTGTCTCTTGGATTTATTCGGAGTGGCTGGAATACAAGAAATCTTCATCCCCATCTAAACTCCATTCAGACAATAGTTTGGTTGAATTGGAAACTGTTGTAACTAAAGAAGATGATCGAGTTGTATTGCTGGAAGGAGGTCTCACAAAGTCTGCATCAATGAGGCAGCCAGCTGCTTCTATCAAAGCAAACTTAATTAGATT...

CDS

Download CDS FASTA

1596 bp · LXL04_033795|LXL04_033795|OH1004|CDS

TTGAAGGTGTCCTTTTTGCTTGGAATCATCCCTATATTTGTCTCTTGGATTTATTCGGAGTGGCTGGAATACAAGAAATCTTCATCCCCATCTAAACTCCATTCAGACAATAGTTTGGTTGAATTGGAAACTGTTGTAACTAAAGAAGATGATCGAGTTGTATTGCTGGAAGGAGGTCTCACAAAGTCTGCATCAATGAGGCAGCCAGCTGCTTCTATCAAAGCAAACTTAATTAGATTTATCACAATGGAGGAGTCCTT...

Protein

Download Protein FASTA

531 aa · LXL04_033795|LXL04_033795|OH1004|PROTEIN

MKVSFLLGIIPIFVSWIYSEWLEYKKSSSPSKLHSDNSLVELETVVTKEDDRVVLLEGGLTKSASMRQPAASIKANLIRFITMEESFLLENRATLRAMSEFGGIIFYFYLCDRTSLIPESTKNYNRDLFLFLYSLLIIVSAMTSLKKHSDKSAFSGKAILYLNRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSIARFSQMMWRLNFFVGFCCIALNNDYMLYYICPMHTLFTLM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033795`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033795

Location Chr07:58116869-58119655 (+)

Description Similar to RWA3: Protein REDUCED WALL ACETYLATION 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g34410`	Probable O-acetyltransferase involved in the acetylation of xylan during secondary wall biosynthesis.	No verified direct reference in this release
`At5g46340`	Probable O-acetyltransferase involved in the acetylation of xylan during secondary wall biosynthesis.	The four Arabidopsis reduced wall acetylation genes are expressed in secondary wall-containing cells and required for the acetylation of xylan.2011 · DOI: 10.1093/pcp/pcr075
`At1g29890`	Probable O-acetyltransferase involved in the acetylation of xylan during secondary wall biosynthesis.	No verified direct reference in this release
`At3g06550`	Probable O-acetyltransferase involved in the acetylation of cell wall polymers (both pectic and nonpectic polysaccharides) and of xylan during secondary wall biosynthesis.	Loss-of-function mutation of REDUCED WALL ACETYLATION2 in Arabidopsis leads to reduced cell wall acetylation and increased resistance to Botrytis cinerea.2011 · DOI: 10.1104/pp.110.168989 Reduced Wall Acetylation proteins play vital and distinct roles in cell wall O-acetylation in Arabidopsis.2013 · DOI: 10.1104/pp.113.225193

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033795 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0005976 polysaccharide metabolic process Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0045491 xylan metabolic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G29890

ath:AT2G34410

ath:AT3G06550

ath:AT5G46340

hsa:64921

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.484

Rank 1 · LXL04_033795 · OH-1004

Golgi apparatus0.467

Rank 2 · LXL04_033795 · OH-1004

Cytoplasm0.099

Rank 3 · LXL04_033795 · OH-1004

Cell membrane0.054

Rank 4 · LXL04_033795 · OH-1004

Nucleus0.051

Rank 5 · LXL04_033795 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07779.19Cas1_AcylT91-503 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033795	`PF07779.19`	Cas1_AcylT	91	503	2.5e-90	304.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q66GQ5`	Arabidopsis thaliana	Protein REDUCED WALL ACETYLATION 3	76.792%	Swiss-Prot	strong database homology
`Q8L7C8`	Arabidopsis thaliana	Protein REDUCED WALL ACETYLATION 1	75.947%	Swiss-Prot	strong database homology
`Q9FXG3`	Arabidopsis thaliana	Protein REDUCED WALL ACETYLATION 4	78.016%	Swiss-Prot	strong database homology
`Q0WW17`	Arabidopsis thaliana	Protein REDUCED WALL ACETYLATION 2	68.362%	Swiss-Prot	strong database homology

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