LXL04_033745 | RubberDandelionOmics

Gene overview

LXL04_033745

Reference: OH-1004 Chr: Chr07 Coordinates: 55148598-55151874 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1062 bp · LXL04_033745|LXL04_033745|OH1004|cDNA

ATGGTTACTCCTGTAACTATCAATGTCGATGAGCCATTAGAGGTAAATTTAAACCTGGAGAAAGAGAAGGAATCTTTGGTGATTAAAGATGAAAATAGTAACGGAAAATCAAGCCCTCATCATGATGACGAAGATATTATTTTCCCTGAAAGTTTGGAGCACAATCTCCCTGATAACCTTTTTGCATCACCAACCCTGAAGATAGTAGAAAAGTATCGTGCACATGTTAAGAAAGTTGAAACCCACATTCCTGAAAATGA...

CDS

Download CDS FASTA

1062 bp · LXL04_033745|LXL04_033745|OH1004|CDS

ATGGTTACTCCTGTAACTATCAATGTCGATGAGCCATTAGAGGTAAATTTAAACCTGGAGAAAGAGAAGGAATCTTTGGTGATTAAAGATGAAAATAGTAACGGAAAATCAAGCCCTCATCATGATGACGAAGATATTATTTTCCCTGAAAGTTTGGAGCACAATCTCCCTGATAACCTTTTTGCATCACCAACCCTGAAGATAGTAGAAAAGTATCGTGCACATGTTAAGAAAGTTGAAACCCACATTCCTGAAAATGA...

Protein

Download Protein FASTA

353 aa · LXL04_033745|LXL04_033745|OH1004|PROTEIN

MVTPVTINVDEPLEVNLNLEKEKESLVIKDENSNGKSSPHHDDEDIIFPESLEHNLPDNLFASPTLKIVEKYRAHVKKVETHIPENEVHTQTRLFKEQVEKLKAKERYLLEENARLCQENLSLFQKVREDPVFRREGPNIHVDATLNITQVCPGTQPGQKVVLKGKDKQTGGVVCCLNVPLVLSSMGLSKEEGNFGIKKMKIWSFIGGSKEDGCKCGIFLAFPVWIASEQPSTRESLESSRQQSSQQHQRKPRKQPDQQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033745`
TK1151 ID	TkA05G098610
OH-1004 ID	LXL04_033745
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 59.821 / OH-1004 18.980 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033745

Location Chr07:55148598-55151874 (-)

Description Similar to GFA2: Chaperone protein dnaJ GFA2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48030`	Chaperone that may play a role in mitochondrial protein folding.	Mitochondrial GFA2 is required for synergid cell death in Arabidopsis.2002 · DOI: 10.1105/tpc.002170

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_033745 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000740 nuclear membrane fusion Biological Process

GO:0006457 protein folding Biological Process

GO:0009408 response to heat Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009558 embryo sac cellularization Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0010198 synergid death Biological Process

GO:0042026 protein refolding Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G48030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.683

Rank 1 · LXL04_033745 · OH-1004

Cytoplasm0.336

Rank 2 · LXL04_033745 · OH-1004

Mitochondrion0.057

Rank 3 · LXL04_033745 · OH-1004

Cell membrane0.055

Rank 4 · LXL04_033745 · OH-1004

Endoplasmic reticulum0.033

Rank 5 · LXL04_033745 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GWW8`	Arabidopsis thaliana	Chaperone protein dnaJ GFA2, mitochondrial	50.000%	Swiss-Prot	weak database homology

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