LXL04_033729 | RubberDandelionOmics

Gene overview

LXL04_033729

Reference: OH-1004 Chr: Chr07 Coordinates: 54567627-54573747 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1767 bp · LXL04_033729|LXL04_033729|OH1004|cDNA

ATGGCTTCCAAGCGACAAAGGCTTACAGCTGGTAATCCACGTGGGCGGGATACTATATTCAGTGACGTAGTTCCTTCATCTGTTGTTGAGATTGCGCCAATTCTTCATGCTGCCGATGAAATTGAATCAGAAAATCCAAGAGTTGCCTACCTTTGTCGATTCTATGCCTTTGAAAAAGCTCATGTACTTGATCCATCATCAAGTGGTCGTGGTGTTTGTCTCTTCAAGACCGCCCTAATTCGTCGCCTAGAAAAGcTTCC...

CDS

Download CDS FASTA

1767 bp · LXL04_033729|LXL04_033729|OH1004|CDS

ATGGCTTCCAAGCGACAAAGGCTTACAGCTGGTAATCCACGTGGGCGGGATACTATATTCAGTGACGTAGTTCCTTCATCTGTTGTTGAGATTGCGCCAATTCTTCATGCTGCCGATGAAATTGAATCAGAAAATCCAAGAGTTGCCTACCTTTGTCGATTCTATGCCTTTGAAAAAGCTCATGTACTTGATCCATCATCAAGTGGTCGTGGTGTTTGTCTCTTCAAGACCGCCCTAATTCGTCGCCTAGAAAAGCTTCC...

Protein

Download Protein FASTA

588 aa · LXL04_033729|LXL04_033729|OH1004|PROTEIN

MASKRQRLTAGNPRGRDTIFSDVVPSSVVEIAPILHAADEIESENPRVAYLCRFYAFEKAHVLDPSSSGRGVCLFKTALIRRLEKLPLAAGPGFLSVYADEVESSNPRAAYLCRVYAHEKTNKRDPLSSGGGGGVHQYKIALIRGLKKQDTESPDSQRNSDAHGMQAFYQHYYRNHIKRLQKADNFDRSRLTKAYQTAAVLFEVLKAVCLEQSIDVAVEILKTHTQITDMYTRTILSLDPESPNQAIQKRREVSSKNRVM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033729`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033729

Location Chr07:54567627-54573747 (+)

Description Similar to HERK1: Receptor-like protein kinase HERK 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033729 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

KEGG gene cross-reference

ath:AT3G46290

ath:AT3G51550

ath:AT5G38990

ath:AT5G39000

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.518

Rank 1 · LXL04_033729 · OH-1004

Nucleus0.289

Rank 2 · LXL04_033729 · OH-1004

Cell membrane0.248

Rank 3 · LXL04_033729 · OH-1004

Endoplasmic reticulum0.075

Rank 4 · LXL04_033729 · OH-1004

Golgi apparatus0.061

Rank 5 · LXL04_033729 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04652.22Vta131-85 aa

PF04652.22Vta198-211 aa

PF00069.32Pkinase284-557 aa

PF07714.24PK_Tyr_Ser-Thr287-560 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033729	`PF04652.22`	Vta1	31	85	1.3e-15	58.3
LXL04_033729	`PF04652.22`	Vta1	98	211	1.3e-15	58.3
LXL04_033729	`PF00069.32`	Pkinase	284	557	2.6e-44	152.3
LXL04_033729	`PF07714.24`	PK_Tyr_Ser-Thr	287	560	3.6e-46	158.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	43.558%	Swiss-Prot	moderate database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	46.441%	Swiss-Prot	weak database homology
`Q9FID9`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g38990	44.951%	Swiss-Prot	moderate database homology
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	45.338%	Swiss-Prot	moderate database homology
`Q9SCZ4`	Arabidopsis thaliana	Receptor-like protein kinase FERONIA	41.358%	Swiss-Prot	moderate database homology

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