LXL04_033709 | RubberDandelionOmics

Gene overview

LXL04_033709

Reference: OH-1004 Chr: Chr07 Coordinates: 53942524-53963159 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

9939 bp · LXL04_033709|LXL04_033709|OH1004|cDNA

ATGGCGTACCCTCGAAGGGCATCTGAGCAGCAGCCACCTGGCAAGCTGCTGAGAACTCAAACAGCTGGCAATTTGGGAGGGGAGGCGATGATGGATAGTGAAGTAGTGCCTTCATCTCTTGTTACAATTGCACCTATTCTTCGTGTTGCTAATGAAGTTGAACCTACCAATCCAAGGGTTGCCTATCTCTGTCGATTCTATGCCTTTGAGCAAGCTCACAAACTAGATCCAACATCAAGTGGTCGTGGTGTTCGTCAATT...

CDS

Download CDS FASTA

9939 bp · LXL04_033709|LXL04_033709|OH1004|CDS

ATGGCGTACCCTCGAAGGGCATCTGAGCAGCAGCCACCTGGCAAGCTGCTGAGAACTCAAACAGCTGGCAATTTGGGAGGGGAGGCGATGATGGATAGTGAAGTAGTGCCTTCATCTCTTGTTACAATTGCACCTATTCTTCGTGTTGCTAATGAAGTTGAACCTACCAATCCAAGGGTTGCCTATCTCTGTCGATTCTATGCCTTTGAGCAAGCTCACAAACTAGATCCAACATCAAGTGGTCGTGGTGTTCGTCAATT...

Protein

Download Protein FASTA

3312 aa · LXL04_033709|LXL04_033709|OH1004|PROTEIN

MAYPRRASEQQPPGKLLRTQTAGNLGGEAMMDSEVVPSSLVTIAPILRVANEVEPTNPRVAYLCRFYAFEQAHKLDPTSSGRGVRQFKTALLQRLEREDATTLIGRKNSDAREMQSYYRHFYGKYIQALQNADKADRTRLTKAYQTAAVLFEVLKAVNLGESVDVAEEILEAHKKVADKTEMYAPYNILPLDPDSSNQAIMRLPEIQASVTALRNTRGLPWPKGYKKKPDEDILDWLQTMFGFQKDSVSNQREHLILLLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033709`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033709

Location Chr07:53942524-53963159 (-)

Description Similar to CALS3: Callose synthase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13000`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release
`At2g31960`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release
`At1g05570`	Involved in callose synthesis at the forming cell plate during cytokinesis.	An Arabidopsis Callose Synthase, GSL5, Is Required for Wound and Papillary Callose Formation.2003 · DOI: 10.1105/tpc.016097
`At2g13680`	Required for the formation of the callose wall separating the tetraspores (interstitial wall) and surrounding the pollen mother cells (peripheral wall).	Callose synthase (CalS5) is required for exine formation during microgametogenesis and for pollen viability in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02379.x Callose (beta-1,3 glucan) is essential for Arabidopsis pollen wall patterning, but not tube growth.2005 · DOI: 10.1186/1471-2229-5-22
`At5g36870`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_033709 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006075 (1->3)-beta-D-glucan biosynthetic process Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000148 1,3-beta-D-glucan synthase complex Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009504 cell plate Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003843 1,3-beta-D-glucan synthase activity Molecular Function

GO:0046527 glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05570

ath:AT2G31960

ath:AT5G13000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.622

Rank 1 · LXL04_033709 · OH-1004

Endoplasmic reticulum0.199

Rank 2 · LXL04_033709 · OH-1004

Golgi apparatus0.117

Rank 3 · LXL04_033709 · OH-1004

Cytoplasm0.112

Rank 4 · LXL04_033709 · OH-1004

Lysosome / Vacuole0.089

Rank 5 · LXL04_033709 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04652.22Vta143-169 aa

PF14288.12FKS1_dom1318-430 aa

PF25968.1CALS1848-1035 aa

PF02364.22Glucan_synthase1043-1130 aa

PF02364.22Glucan_synthase1135-1752 aa

PF25968.1CALS12218-2405 aa

PF02364.22Glucan_synthase2413-2500 aa

PF02364.22Glucan_synthase2505-3122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033709	`PF04652.22`	Vta1	43	169	2.5e-16	60.7
LXL04_033709	`PF14288.12`	FKS1_dom1	318	430	2e-42	144.7
LXL04_033709	`PF25968.1`	CALS1	848	1035	6.2e-126	417.6
LXL04_033709	`PF02364.22`	Glucan_synthase	1043	1130		1557.6
LXL04_033709	`PF02364.22`	Glucan_synthase	1135	1752		1557.6
LXL04_033709	`PF25968.1`	CALS1	2218	2405	6.2e-126	417.6
LXL04_033709	`PF02364.22`	Glucan_synthase	2413	2500		1557.6
LXL04_033709	`PF02364.22`	Glucan_synthase	2505	3122		1557.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXT9`	Arabidopsis thaliana	Callose synthase 3	74.667%	Swiss-Prot	moderate database homology
`Q9SL03`	Arabidopsis thaliana	Callose synthase 2	74.116%	Swiss-Prot	moderate database homology
`Q9AUE0`	Arabidopsis thaliana	Callose synthase 1	73.606%	Swiss-Prot	moderate database homology
`Q3B724`	Arabidopsis thaliana	Callose synthase 5	58.802%	Swiss-Prot	moderate database homology
`Q9LTG5`	Arabidopsis thaliana	Callose synthase 4	60.812%	Swiss-Prot	moderate database homology

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