LXL04_033695 | RubberDandelionOmics

Gene overview

LXL04_033695

Reference: OH-1004 Chr: Chr07 Coordinates: 53492862-53495228 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1194 bp · LXL04_033695|LXL04_033695|OH1004|cDNA

ATGGTGGCGCAAATcactggtggtggtggtggcggccGCATCAATGAAAATGGTGGTGAAGTGAGAAGAGTTCATATTGTATATTATCTTAGCCGTAATGGCGGTATCGAACATCCCCATCTCATTCGCATCCACCATGTCTCACATAACGGAGTTTGCTTGAGAGACGTTAAAAGCTGGTTATCAGAACTCAGAGGAGAGGACATGCCAGAGCGTTTTGCTTGGTCATACAAGAGAATGTACAAAGGAGGATATGTTTG...

CDS

Download CDS FASTA

1194 bp · LXL04_033695|LXL04_033695|OH1004|CDS

ATGGTGGCGCAAATCACTGGTGGTGGTGGTGGCGGCCGCATCAATGAAAATGGTGGTGAAGTGAGAAGAGTTCATATTGTATATTATCTTAGCCGTAATGGCGGTATCGAACATCCCCATCTCATTCGCATCCACCATGTCTCACATAACGGAGTTTGCTTGAGAGACGTTAAAAGCTGGTTATCAGAACTCAGAGGAGAGGACATGCCAGAGCGTTTTGCTTGGTCATACAAGAGAATGTACAAAGGAGGATATGTTTG...

Protein

Download Protein FASTA

397 aa · LXL04_033695|LXL04_033695|OH1004|PROTEIN

MVAQITGGGGGGRINENGGEVRRVHIVYYLSRNGGIEHPHLIRIHHVSHNGVCLRDVKSWLSELRGEDMPERFAWSYKRMYKGGYVWQDLLDEDLITPICDNEYVLKGSEISSTTLNNDINRPYEKEVFDQQNSPPFKVNIKSPKYPLTEREYPLDFSLDTSIEIEEPSFVSNVTTEDTTKNQDTFEEQEVIQSIKDKNENNYSLNNIFLDRNTDDNNNSDSDKSNKSVKSCFKAPSLPSYSLGKSSRFSGSRASHMLRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033695`
TK1151 ID	TkA08G302320
OH-1004 ID	LXL04_033695
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.600
Protein coverage (%)	TK1151 99.702 / OH-1004 84.383 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033695

Location Chr07:53492862-53495228 (+)

Description Similar to UFC: Protein UPSTREAM OF FLC

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05577`	SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization.	No verified direct reference in this release
`At3g46110`	SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization.	Characterization the role of a UFC homolog, AtAuxRP3, in the regulation of Arabidopsis seedling growth and stress response.2019 · DOI: 10.1016/j.jplph.2019.152990
`At5g59790`	SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.	No verified direct reference in this release
`At2g28150`	SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization.	No verified direct reference in this release
`At5g10150`	Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033695 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010229 inflorescence development Biological Process

GO:0010600 regulation of auxin biosynthetic process Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0051258 protein polymerization Biological Process

GO:0051301 cell division Biological Process

GO:0051302 regulation of cell division Biological Process

GO:0090708 specification of plant organ axis polarity Biological Process

GO:1902074 response to salt Biological Process

GO:1905392 plant organ morphogenesis Biological Process

GO:2000024 regulation of leaf development Biological Process

KEGG gene cross-reference

ath:AT1G05577

ath:AT2G28150

ath:AT3G46110

ath:AT5G10150

ath:AT5G59790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.392

Rank 1 · LXL04_033695 · OH-1004

Nucleus0.364

Rank 2 · LXL04_033695 · OH-1004

Cytoplasm0.348

Rank 3 · LXL04_033695 · OH-1004

Endoplasmic reticulum0.066

Rank 4 · LXL04_033695 · OH-1004

Plastid0.038

Rank 5 · LXL04_033695 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06136.20SOK24-111 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033695	`PF06136.20`	SOK	24	111	5.5e-32	110.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SYJ8`	Arabidopsis thaliana	Protein SOSEKI 1	40.510%	Swiss-Prot	moderate database homology
`Q8GY65`	Arabidopsis thaliana	Protein SOSEKI 4	55.556%	Swiss-Prot	weak database homology
`Q9FJF5`	Arabidopsis thaliana	Protein SOSEKI 5	49.474%	Swiss-Prot	weak database homology
`Q8GYT8`	Arabidopsis thaliana	Protein SOSEKI 3	51.648%	Swiss-Prot	weak database homology
`Q9LX14`	Arabidopsis thaliana	Protein SOSEKI 2	49.020%	Swiss-Prot	weak database homology

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