LXL04_033442 | RubberDandelionOmics

Gene overview

LXL04_033442

Reference: OH-1004 Chr: Chr07 Coordinates: 44046921-44047800 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

708 bp · LXL04_033442|LXL04_033442|OH1004|cDNA

ATGTCTTCCTTCTACCATGATCCATCAGCTGCGTGTAGAACACAATCTACATGTCAGGAAGGTGATCTTTCTTGGAACCATGCAAGTGAAGTTCTATCCATGGATGCAAATAAACAACAAAAACTATTAGAGGATGACATCGAATCTTCACAAGGGGGAGAATCTTTGTGTGAAGGTGGAAAAAATCAAGAACCATGTGAGGGTATGCTATTTGAATCAGAAGAAGCAGCAAGAACATTTTATGATGATTATGCAACACG...

CDS

Download CDS FASTA

708 bp · LXL04_033442|LXL04_033442|OH1004|CDS

ATGTCTTCCTTCTACCATGATCCATCAGCTGCGTGTAGAACACAATCTACATGTCAGGAAGGTGATCTTTCTTGGAACCATGCAAGTGAAGTTCTATCCATGGATGCAAATAAACAACAAAAACTATTAGAGGATGACATCGAATCTTCACAAGGGGGAGAATCTTTGTGTGAAGGTGGAAAAAATCAAGAACCATGTGAGGGTATGCTATTTGAATCAGAAGAAGCAGCAAGAACATTTTATGATGATTATGCAACACG...

Protein

Download Protein FASTA

235 aa · LXL04_033442|LXL04_033442|OH1004|PROTEIN

MSSFYHDPSAACRTQSTCQEGDLSWNHASEVLSMDANKQQKLLEDDIESSQGGESLCEGGKNQEPCEGMLFESEEAARTFYDDYATRVGFITRVLSSRKSERDGTVISRGLGCRGDSENHKIMIQKKNKNRESCTAMILVKREKPGNWVVRKFIREHNHPFHVSVSKRRSTFDEKDKRIQELNAELRVKKRLSALYREQLLALMKDVDGHNEHLSLKVQVVRNNLKKLEARNGHI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033442`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033442

Location Chr07:44046921-44047800 (+)

Description Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38180`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At5g18960`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At2g32250`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At3g06250`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At2g27110`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033442 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G32250

ath:AT3G06250

ath:AT4G38180

ath:AT5G18960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948

Rank 1 · LXL04_033442 · OH-1004

Cytoplasm0.110

Rank 2 · LXL04_033442 · OH-1004

Cell membrane0.028

Rank 3 · LXL04_033442 · OH-1004

Endoplasmic reticulum0.018

Rank 4 · LXL04_033442 · OH-1004

Plastid0.014

Rank 5 · LXL04_033442 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03101.22FAR179-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033442	`PF03101.22`	FAR1	79	161	1.1e-20	74.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZL8`	Arabidopsis thaliana	Protein FAR1-RELATED SEQUENCE 5	44.340%	Swiss-Prot	weak database homology
`Q3E7I5`	Arabidopsis thaliana	Protein FAR1-RELATED SEQUENCE 12	40.196%	Swiss-Prot	weak database homology
`Q3EBQ3`	Arabidopsis thaliana	Protein FAR1-RELATED SEQUENCE 2	37.143%	Swiss-Prot	weak database homology
`Q9M8J3`	Arabidopsis thaliana	Protein FAR1-RELATED SEQUENCE 7	38.235%	Swiss-Prot	weak database homology
`Q9ZVC9`	Arabidopsis thaliana	Protein FAR1-RELATED SEQUENCE 3	37.500%	Swiss-Prot	weak database homology

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