Gene Card
Gene overview
cDNA / CDS / Protein Sequences
927 bp · LXL04_033387|LXL04_033387|OH1004|cDNA
ATGGTATCATCGCGTAGACAAGAACAACCGCCGTTTTCCCACCCCACAACCGCCGCAAGATGGTGGTCGAAGGATTCAGTAGCCATTGTCACCGGAGCAAATAAGGGTATTGGGTACGCATTGGTAAAACGGTTTGCTGAGTTGGGGTTAACGGTTGTGTTAACGGCTCGAAATCAGTCCAGAGGTTTACAGGCCATGGATTCGCTTAAAGTTCTTGGACTTGATCATCATGTTCGTTTCTGTCAGCTTGATATATCGGA...
927 bp · LXL04_033387|LXL04_033387|OH1004|CDS
ATGGTATCATCGCGTAGACAAGAACAACCGCCGTTTTCCCACCCCACAACCGCCGCAAGATGGTGGTCGAAGGATTCAGTAGCCATTGTCACCGGAGCAAATAAGGGTATTGGGTACGCATTGGTAAAACGGTTTGCTGAGTTGGGGTTAACGGTTGTGTTAACGGCTCGAAATCAGTCCAGAGGTTTACAGGCCATGGATTCGCTTAAAGTTCTTGGACTTGATCATCATGTTCGTTTCTGTCAGCTTGATATATCGGA...
Protein
Download Protein FASTA308 aa · LXL04_033387|LXL04_033387|OH1004|PROTEIN
MVSSRRQEQPPFSHPTTAARWWSKDSVAIVTGANKGIGYALVKRFAELGLTVVLTARNQSRGLQAMDSLKVLGLDHHVRFCQLDISDPASICSFVSWFRSRFVAFDILVILPIWTQVNNAAVCFNAMNENKLDHAETVINTNYYGTKHFTEAMLPLFRRSASMSRILNISSRLGTLDKLNNPQMKAILGDTEILSEDGIDRVVNTFLEDVKEGRWRTKGWPKIWTDYSVAKLALNAYSQVLARRYKGVVSVNSFCPGFTQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_033387 |
|---|---|
| TK1151 ID | TkA08G256750 |
| OH-1004 ID | LXL04_033387 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_033387 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:42424194-42427034 (-) | |||||||||
| Description | Similar to SDR1: (+)-neomenthol dehydrogenase | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0016104 triterpenoid biosynthetic process Biological Process GO:0016135 saponin biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0008106 alcohol dehydrogenase (NADP+) activity Molecular Function GO:0016491 oxidoreductase activity Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function GO:0047501 (+)-neomenthol dehydrogenase activity Molecular Function GO:0047504 (-)-menthol dehydrogenase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G24190 ath:AT3G61220 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00106.32adh_short27-175 aaPF13561.13adh_short_C232-173 aaPF13561.13adh_short_C2218-272 aaPF00106.32adh_short224-268 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_033387 | PF00106.32 | adh_short | 27 | 175 | 2.6e-31 | 109.4 |
| LXL04_033387 | PF13561.13 | adh_short_C2 | 32 | 173 | 7.2e-21 | 75.6 |
| LXL04_033387 | PF13561.13 | adh_short_C2 | 218 | 272 | 7.2e-21 | 75.6 |
| LXL04_033387 | PF00106.32 | adh_short | 224 | 268 | 2.6e-31 | 109.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.