Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2244 bp · LXL04_033360|LXL04_033360|OH1004|cDNA
ATGATCAGAAAGCCAATTGCCCACAAAGACAAGTACTCAAACAGATACGAGACCTCACAGAATCACTCCAATGAAGGCACATCTGCAAGAACAAGGCCTTATAGCTTTGATGAGATAATGCATAGAAGGAAAACCAAAAAGCTATCTGGAAATGTTGAAGGTCAACAACGACTTGCTTCAGAGATAGTCTGTAATAAAGAAGCTGAAAGTGTCTCTGGTCGTGTAGAATCTGATAGACACAGACACAGGGATGGCTATGG...
2244 bp · LXL04_033360|LXL04_033360|OH1004|CDS
ATGATCAGAAAGCCAATTGCCCACAAAGACAAGTACTCAAACAGATACGAGACCTCACAGAATCACTCCAATGAAGGCACATCTGCAAGAACAAGGCCTTATAGCTTTGATGAGATAATGCATAGAAGGAAAACCAAAAAGCTATCTGGAAATGTTGAAGGTCAACAACGACTTGCTTCAGAGATAGTCTGTAATAAAGAAGCTGAAAGTGTCTCTGGTCGTGTAGAATCTGATAGACACAGACACAGGGATGGCTATGG...
Protein
Download Protein FASTA747 aa · LXL04_033360|LXL04_033360|OH1004|PROTEIN
MIRKPIAHKDKYSNRYETSQNHSNEGTSARTRPYSFDEIMHRRKTKKLSGNVEGQQRLASEIVCNKEAESVSGRVESDRHRHRDGYGVSEHHASNDPSKQTSRTKESDNNTQRKSKLDSDNPKDRRKERDSVHEKRKNQDRLTDDFHNEHSKRHVKDSSVKERDRNGYNEKSRDHESRKRHEREKRRSNSPSQRGNKQRLYDVREHEDKKRLSSLSLSNNDSINNKSKRHDTSGLSRLGGYSPRKRRNESTIKTPSPIDS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_033360 |
|---|---|
| TK1151 ID | TkA08G253820 |
| OH-1004 ID | LXL04_033360 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 95.500 |
| Protein coverage (%) | TK1151 99.700 / OH-1004 89.960Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_033360 |
|---|---|
| Location | Chr07:41666429-41671016 (+) |
| Description | Similar to U2af50: Splicing factor U2AF 50 kDa subunit |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000245 spliceosomal complex assembly Biological Process GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0000389 mRNA 3'-splice site recognition Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006397 mRNA processing Biological Process GO:0007281 germ cell development Biological Process GO:0008380 RNA splicing Biological Process GO:0010172 embryonic body morphogenesis Biological Process GO:0031397 negative regulation of protein ubiquitination Biological Process GO:0033120 positive regulation of RNA splicing Biological Process GO:0046833 positive regulation of RNA export from nucleus Biological Process GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process |
| KEGG gene cross-reference | cbr:CBG_15152 cel:CELE_Y92C3B.2 dme:Dmel_CG9998 hsa:11338 mmu:22185 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_1443-510 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_033360 | PF00076.29 | RRM_1 | 443 | 510 | 1.5e-17 | 63.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.