LXL04_033140 | RubberDandelionOmics

Gene overview

LXL04_033140

Reference: OH-1004 Chr: Chr07 Coordinates: 36984786-36987615 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

780 bp · LXL04_033140|LXL04_033140|OH1004|cDNA

ATGGCCAAAATATTATTCTGCCTCCTTCTCCCACTCTTCATCGCCTTCTCTCTAACATTTCCGACCACCGGAGCTGATTCCACCTTCGTGAAGTCCGTTAAACGGAACCCAATGAAGCTCCGAGAAGAAAAACTCAGTCACTTCCGATTCTACTGGCACGATATCATCAGCGGCCCCAATCCGACGGTCGTGAACATCGTGCAACCACCTGCCACCAACAAAACAGGAGCCACCGGGTTCGGAATGATTAACATGATCGA...

CDS

Download CDS FASTA

780 bp · LXL04_033140|LXL04_033140|OH1004|CDS

ATGGCCAAAATATTATTCTGCCTCCTTCTCCCACTCTTCATCGCCTTCTCTCTAACATTTCCGACCACCGGAGCTGATTCCACCTTCGTGAAGTCCGTTAAACGGAACCCAATGAAGCTCCGAGAAGAAAAACTCAGTCACTTCCGATTCTACTGGCACGATATCATCAGCGGCCCCAATCCGACGGTCGTGAACATCGTGCAACCACCTGCCACCAACAAAACAGGAGCCACCGGGTTCGGAATGATTAACATGATCGA...

Protein

Download Protein FASTA

259 aa · LXL04_033140|LXL04_033140|OH1004|PROTEIN

MAKILFCLLLPLFIAFSLTFPTTGADSTFVKSVKRNPMKLREEKLSHFRFYWHDIISGPNPTVVNIVQPPATNKTGATGFGMINMIDDPLTEKPEAGSKLLGRAQGLYGQASQGELGLLMAMNFVFSTGKYNGSTLTILGRNPVFHKVREMPVIGGSGLFRFARGYVQASTHTLDFKTGDAVVDDKRETTINIGKYLREEELVKEGTGKTTLAIGDGANNVGIMPLPGDAIQRAENTVKAIHGRLGFGLEKKKSKRKST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033140`
TK1151 ID	TkA08G234630
OH-1004 ID	LXL04_033140
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	79.600
Protein coverage (%)	TK1151 93.798 / OH-1004 56.757 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033140

Location Chr07:36984786-36987615 (-)

Description Similar to DIR19: Dirigent protein 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g58170`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At1g55210`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At5g49040`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At3g13650`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At3g13662`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033140 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT1G55210

ath:AT1G58170

ath:AT3G13650

ath:AT3G13662

ath:AT5G49040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.282

Rank 1 · LXL04_033140 · OH-1004

Endoplasmic reticulum0.208

Rank 2 · LXL04_033140 · OH-1004

Lysosome / Vacuole0.170

Rank 3 · LXL04_033140 · OH-1004

Cell membrane0.116

Rank 4 · LXL04_033140 · OH-1004

Plastid0.096

Rank 5 · LXL04_033140 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018.20Dirigent46-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033140	`PF03018.20`	Dirigent	46	183	2.1e-56	190.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C523`	Arabidopsis thaliana	Dirigent protein 19	61.039%	Swiss-Prot	moderate database homology
`Q9C891`	Arabidopsis thaliana	Dirigent protein 20	53.514%	Swiss-Prot	strong database homology
`Q9FI66`	Arabidopsis thaliana	Dirigent protein 3	48.387%	Swiss-Prot	moderate database homology
`Q9LID5`	Arabidopsis thaliana	Dirigent protein 7	48.370%	Swiss-Prot	moderate database homology
`F4JDF3`	Arabidopsis thaliana	Dirigent protein 8	56.115%	Swiss-Prot	moderate database homology

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