LXL04_032932 | RubberDandelionOmics

Gene overview

LXL04_032932

Reference: OH-1004 Chr: Chr07 Coordinates: 31850562-31851702 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · LXL04_032932|LXL04_032932|OH1004|cDNA

ATGAGTAAGCTTCAGAGTGAAGCCCTTAGAGAAGCAATCACTCAAATTACCACAGATGCGAAGGAGAAGAAGCGCAACTTCACAGAAACCATTGAGCTCCAAATTGGACTCAAGAACTACGACCCCCAAAAGGACAAACGTTTCAGTGGTACAGTGAAGTTGCCTCACATTCCAAGGCCCAAATTGAAGGTTTGCATGCTTGGAGATGCCCAACATGTTGAAGAGGCTCAAAAGATCGGCCTTGAGTACATGGATGTTGA...

CDS

Download CDS FASTA

651 bp · LXL04_032932|LXL04_032932|OH1004|CDS

ATGAGTAAGCTTCAGAGTGAAGCCCTTAGAGAAGCAATCACTCAAATTACCACAGATGCGAAGGAGAAGAAGCGCAACTTCACAGAAACCATTGAGCTCCAAATTGGACTCAAGAACTACGACCCCCAAAAGGACAAACGTTTCAGTGGTACAGTGAAGTTGCCTCACATTCCAAGGCCCAAATTGAAGGTTTGCATGCTTGGAGATGCCCAACATGTTGAAGAGGCTCAAAAGATCGGCCTTGAGTACATGGATGTTGA...

Protein

Download Protein FASTA

216 aa · LXL04_032932|LXL04_032932|OH1004|PROTEIN

MSKLQSEALREAITQITTDAKEKKRNFTETIELQIGLKNYDPQKDKRFSGTVKLPHIPRPKLKVCMLGDAQHVEEAQKIGLEYMDVEGLKKLNKNKKLVKKLAKKHQAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNCSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKTTMGKPVRIF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032932`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032932

Location Chr07:31850562-31851702 (-)

Description Similar to RPL10AA: 60S ribosomal protein L10a-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08360`	Large ribosomal subunit protein uL1z.	No verified direct reference in this release
`At2g27530`	Large ribosomal subunit protein uL1y.	No verified direct reference in this release
`At5g22440`	Large ribosomal subunit protein uL1x.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0558800`	Large ribosomal subunit protein uL1.	No verified direct reference in this release
`UniProt: B8B9K6`	Large ribosomal subunit protein uL1.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032932 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0090696 post-embryonic plant organ development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0015934 large ribosomal subunit Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G08360

ath:AT2G27530

ath:AT5G22440

dosa:Os08g0558800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.669

Rank 1 · LXL04_032932 · OH-1004

Nucleus0.369

Rank 2 · LXL04_032932 · OH-1004

Endoplasmic reticulum0.086

Rank 3 · LXL04_032932 · OH-1004

Cell membrane0.056

Rank 4 · LXL04_032932 · OH-1004

Mitochondrion0.056

Rank 5 · LXL04_032932 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00687.27Ribosomal_L121-210 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032932	`PF00687.27`	Ribosomal_L1	21	210	6.3e-53	180.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VZB9`	Arabidopsis thaliana	Large ribosomal subunit protein uL1z	89.815%	Swiss-Prot	strong database homology
`P59230`	Arabidopsis thaliana	Large ribosomal subunit protein uL1y	88.426%	Swiss-Prot	strong database homology
`P59231`	Arabidopsis thaliana	Large ribosomal subunit protein uL1x	89.401%	Swiss-Prot	strong database homology
`B7F845`	Oryza sativa subsp. japonica	Large ribosomal subunit protein uL1	86.111%	Swiss-Prot	strong database homology
`B8B9K6`	Oryza sativa subsp. indica	Large ribosomal subunit protein uL1	86.111%	Swiss-Prot	strong database homology

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