Gene Card
Gene overview
cDNA / CDS / Protein Sequences
825 bp · LXL04_032904|LXL04_032904|OH1004|cDNA
ATGCTTGATAAAGGTTTCAGTCACCAAAAATTTATGAACTACGTCAAAGAAAACATCCGGATGAAAGCTAAACTGGGCCAACGAGTCAAGCCCAATAACGAAGCCTTCGCTTTCCATACTCTTAGGTTAGAACCAGCAGCTTTGCTCCTCACACACGGATTCAGGTTTGTTAACTCTATCCCTTCGATCTGTTCAATCCATGTTGCACCACCTGctgctgctgttgttgttgaAGACGGAAAATCTCGCAGCGAAATTTT...
825 bp · LXL04_032904|LXL04_032904|OH1004|CDS
ATGCTTGATAAAGGTTTCAGTCACCAAAAATTTATGAACTACGTCAAAGAAAACATCCGGATGAAAGCTAAACTGGGCCAACGAGTCAAGCCCAATAACGAAGCCTTCGCTTTCCATACTCTTAGGTTAGAACCAGCAGCTTTGCTCCTCACACACGGATTCAGGTTTGTTAACTCTATCCCTTCGATCTGTTCAATCCATGTTGCACCACCTGCTGCTGCTGTTGTTGTTGAAGACGGAAAATCTCGCAGCGAAATTTT...
Protein
Download Protein FASTA274 aa · LXL04_032904|LXL04_032904|OH1004|PROTEIN
MLDKGFSHQKFMNYVKENIRMKAKLGQRVKPNNEAFAFHTLRLEPAALLLTHGFRFVNSIPSICSIHVAPPAAAVVVEDGKSRSEILLFNRWTYDDVQVPDLSVEDYITATASKHPIYMPHTAGRYQARRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDANPIQIIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032904 |
|---|---|
| TK1151 ID | TkA08G212890 |
| OH-1004 ID | LXL04_032904 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 76.277Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032904 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:31482455-31483999 (-) | |||||||||
| Description | Similar to RPS5: 40S ribosomal protein S5 (Fragment) | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002181 cytoplasmic translation Biological Process GO:0006412 translation Biological Process GO:0006450 regulation of translational fidelity Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009506 plasmodesma Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G37270 ath:AT3G11940 mmu:20103 ocu:100340028 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00177.28Ribosomal_S7113-274 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032904 | PF00177.28 | Ribosomal_S7 | 113 | 274 | 1.3e-41 | 142.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.