LXL04_032887 | RubberDandelionOmics

Gene overview

LXL04_032887

Reference: OH-1004 Chr: Chr07 Coordinates: 31190102-31191523 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

675 bp · LXL04_032887|LXL04_032887|OH1004|cDNA

ATGGCATCTCATATTGTCGGTTATCCACGTATGGGACCAAAACGAGAGCTGAAATTTGCGCTTGAATCGTTTTGGGATGGTAAGAGCAGTGCCGACGACTTGCAGAAAGTTGCTTCTGACATTCGATCAAGCATCTGGAAACAGATGAAGGACGCCGGTATCAAATATATCCCTAGCAACACCTTCTCTTTCTACGATCAAGTCCTTGACACCACCTGCCATGGAAATGACCAAATGGTTCGGCACAAATTTCTTGGAGT...

CDS

Download CDS FASTA

675 bp · LXL04_032887|LXL04_032887|OH1004|CDS

ATGGCATCTCATATTGTCGGTTATCCACGTATGGGACCAAAACGAGAGCTGAAATTTGCGCTTGAATCGTTTTGGGATGGTAAGAGCAGTGCCGACGACTTGCAGAAAGTTGCTTCTGACATTCGATCAAGCATCTGGAAACAGATGAAGGACGCCGGTATCAAATATATCCCTAGCAACACCTTCTCTTTCTACGATCAAGTCCTTGACACCACCTGCCATGGAAATGACCAAATGGTTCGGCACAAATTTCTTGGAGT...

Protein

Download Protein FASTA

224 aa · LXL04_032887|LXL04_032887|OH1004|PROTEIN

MASHIVGYPRMGPKRELKFALESFWDGKSSADDLQKVASDIRSSIWKQMKDAGIKYIPSNTFSFYDQVLDTTCHGNDQMVRHKFLGVDTVLLLLALLATYCYLNLQKASHYRIERSRCNMDPTKLTGRVITSVTWPNSNHLKIVWRLKISHSKLMRQPELATAQRALRSQRIRQKGDTGNEHVVSRSHGFRALPLNRKVCILTTLKSFKNFNIFTIKVNYILGP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032887`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032887

Location Chr07:31190102-31191523 (-)

Description Similar to Os12g0624000: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0624000`	Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.	No verified direct reference in this release
`Os12g0623900`	Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032887 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009086 methionine biosynthetic process Biological Process

GO:0032259 methylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0008705 methionine synthase activity Molecular Function

KEGG gene cross-reference

ag:CAA58474

dosa:Os12g0623900

dosa:Os12g0624000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.388

Rank 1 · LXL04_032887 · OH-1004

Nucleus0.249

Rank 2 · LXL04_032887 · OH-1004

Mitochondrion0.228

Rank 3 · LXL04_032887 · OH-1004

Plastid0.111

Rank 4 · LXL04_032887 · OH-1004

Peroxisome0.094

Rank 5 · LXL04_032887 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08267.19Meth_synt_13-82 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032887	`PF08267.19`	Meth_synt_1	3	82	1.3e-27	97.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q2QLY4`	Oryza sativa subsp. japonica	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2	89.041%	Swiss-Prot	weak database homology
`Q2QLY5`	Oryza sativa subsp. japonica	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1	87.671%	Swiss-Prot	weak database homology

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