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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_032881
Reference: OH-1004 Chr: Chr07 Coordinates: 30962247-30965141 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2895 bp · LXL04_032881|LXL04_032881|OH1004|cDNA

ATGGCTCCAACTCCATACATAAATCACTTCAAGTTCTTGCAAATCATCTCCCTCCTATATGTGTTGGTGAGAGTGTCATGCACTAAATCATCACTAAGCCATAATGAAGAATGCTCAGCCTTGTTCCAGTTTAAGCAAAACATAATTCATCAAGACGATGCAGCTTGTGCTGCTCATGGATCGCAAGTGCTCTACTCTTGGAACACTAGTTTTGATTGTTGTTCATGGGAGGGGGTGGCATGCAACAATGACCATTATCA...

CDS

Download CDS FASTA

2895 bp · LXL04_032881|LXL04_032881|OH1004|CDS

ATGGCTCCAACTCCATACATAAATCACTTCAAGTTCTTGCAAATCATCTCCCTCCTATATGTGTTGGTGAGAGTGTCATGCACTAAATCATCACTAAGCCATAATGAAGAATGCTCAGCCTTGTTCCAGTTTAAGCAAAACATAATTCATCAAGACGATGCAGCTTGTGCTGCTCATGGATCGCAAGTGCTCTACTCTTGGAACACTAGTTTTGATTGTTGTTCATGGGAGGGGGTGGCATGCAACAATGACCATTATCA...

Protein

Download Protein FASTA

964 aa · LXL04_032881|LXL04_032881|OH1004|PROTEIN

MAPTPYINHFKFLQIISLLYVLVRVSCTKSSLSHNEECSALFQFKQNIIHQDDAACAAHGSQVLYSWNTSFDCCSWEGVACNNDHYQYGHVIGLDLSESSLCGHINSNSTIFSLIHLQRLNLSGNNFGESQIPSEIARLKQLRKLDLSYCGFRGQIPNEISQLVRLSSLNLSWNSPNLHSPSLNKLVQNLTGLEELDLSGVDINSDVPHFMGNFSSLRSIKLRDCSLMNELPTTIFELPKLQILDLALNSNITGSLPESI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_032881
TK1151 IDTkA08G210850
OH-1004 IDLXL04_032881
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_032881
LocationChr07:30962247-30965141 (+)
DescriptionSimilar to RLP7: Receptor-like protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At1g45616 Receptor-like protein 6. No verified direct reference in this release
At3g11010 Receptor-like protein 34. No verified direct reference in this release
At5g27060 Receptor-like protein 53. No verified direct reference in this release
At4g13900 Receptor-like protein 49. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032881 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT3G11010
ath:AT5G27060
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.850
Rank 1 · LXL04_032881 · OH-1004
Endoplasmic reticulum0.100
Rank 2 · LXL04_032881 · OH-1004
Cytoplasm0.061
Rank 3 · LXL04_032881 · OH-1004
Nucleus0.050
Rank 4 · LXL04_032881 · OH-1004
Lysosome / Vacuole0.024
Rank 5 · LXL04_032881 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_234-82 aa
PF23598.2LRR_1494-221 aa
PF29594.1LRR_SKP2112-290 aa
PF25019.1LRR_R13L1-DRL21165-246 aa
PF25013.1LRR_Zer-1185-254 aa
PF23598.2LRR_14211-438 aa
PF13855.13LRR_8216-274 aa
PF12799.14LRR_4384-421 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_032881PF08263.18LRRNT_234822.1e-0731.8
LXL04_032881PF23598.2LRR_14942212.7e-39135.6
LXL04_032881PF29594.1LRR_SKP21122902.8e-1247.2
LXL04_032881PF25019.1LRR_R13L1-DRL211652463e-1247.3
LXL04_032881PF25013.1LRR_Zer-11852548.2e-1555.9
LXL04_032881PF23598.2LRR_142114382.7e-39135.6
LXL04_032881PF13855.13LRR_82162749.2e-51170.2
LXL04_032881PF12799.14LRR_43844211.6e-36124.2
LXL04_032881PF13855.13LRR_83854459.2e-51170.2
LXL04_032881PF13855.13LRR_86046629.2e-51170.2
LXL04_032881PF12799.14LRR_46296621.6e-36124.2
LXL04_032881PF13855.13LRR_86527149.2e-51170.2
LXL04_032881PF12799.14LRR_47998341.6e-36124.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C699Arabidopsis thalianaReceptor-like protein 736.558%Swiss-Protmoderate database homology
Q9C637Arabidopsis thalianaReceptor-like protein 636.816%Swiss-Protmoderate database homology
Q9SRL2Arabidopsis thalianaReceptor-like protein 3435.972%Swiss-Protmoderate database homology
Q9S9U3Arabidopsis thalianaReceptor-like protein 5335.217%Swiss-Protmoderate database homology
Q9SVM3Arabidopsis thalianaReceptor-like protein 4936.925%Swiss-Protmoderate database homology

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