LXL04_032791 | RubberDandelionOmics

Gene overview

LXL04_032791

Reference: OH-1004 Chr: Chr07 Coordinates: 29341048-29341864 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

771 bp · LXL04_032791|LXL04_032791|OH1004|cDNA

atgtcttcttcatcttcCTACAACCAGTTCGCTCACTTAGAAATCCCCCTGGAAGAAATAGCATCTGCCACCAACAACTTCCCTGATGAAAATCTCATTAAAGGAAGCGAATTGGGAAAGGCATACAAGGGCAAGATCTTGCGCATAGGGAAGGAGATGCTGAGTTCTGGAACGAGATTTCGATGCTTTCCACACTTTGACCACAAAAACCTTGTCTCCATAGTTGGGTTTTGTGTTGAAGATGGATTAAAGATCATCGT...

CDS

Download CDS FASTA

771 bp · LXL04_032791|LXL04_032791|OH1004|CDS

ATGTCTTCTTCATCTTCCTACAACCAGTTCGCTCACTTAGAAATCCCCCTGGAAGAAATAGCATCTGCCACCAACAACTTCCCTGATGAAAATCTCATTAAAGGAAGCGAATTGGGAAAGGCATACAAGGGCAAGATCTTGCGCATAGGGAAGGAGATGCTGAGTTCTGGAACGAGATTTCGATGCTTTCCACACTTTGACCACAAAAACCTTGTCTCCATAGTTGGGTTTTGTGTTGAAGATGGATTAAAGATCATCGT...

Protein

Download Protein FASTA

256 aa · LXL04_032791|LXL04_032791|OH1004|PROTEIN

MSSSSSYNQFAHLEIPLEEIASATNNFPDENLIKGSELGKAYKGKILRIGKEMLSSGTRFRCFPHFDHKNLVSIVGFCVEDGLKIIVYKHEAKGSLDTFLRDPNLTWMRRLKICVGIAHALSYIHYDAGRDFSVIHCDTRSSKILLDDDREAKLSGFELSMKQTANQRNGLFFTDVCGTYGYRDPTYNQSGSVTHKADMYSFGVVLFEVLCRKKAVMVEKNNRLLAPVVISEYEGGRLNVGPGFRLFKRWAGKKLG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032791`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032791

Location Chr07:29341048-29341864 (+)

Description Similar to ANX1: Receptor-like protein kinase ANXUR1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At2g23200`	Probable receptor-like protein kinase At2g23200.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032791 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0043680 filiform apparatus Cellular Component

KEGG gene cross-reference

ath:AT2G23200

ath:AT3G04690

ath:AT3G46290

ath:AT5G28680

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.450

Rank 1 · LXL04_032791 · OH-1004

Cell membrane0.373

Rank 2 · LXL04_032791 · OH-1004

Nucleus0.277

Rank 3 · LXL04_032791 · OH-1004

Endoplasmic reticulum0.056

Rank 4 · LXL04_032791 · OH-1004

Golgi apparatus0.035

Rank 5 · LXL04_032791 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr61-223 aa

PF00069.32Pkinase64-222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032791	`PF07714.24`	PK_Tyr_Ser-Thr	61	223	2.6e-21	76.8
LXL04_032791	`PF00069.32`	Pkinase	64	222	4.9e-20	72.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SR05`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR1	39.070%	Swiss-Prot	moderate database homology
`O22187`	Arabidopsis thaliana	Probable receptor-like protein kinase At2g23200	37.900%	Swiss-Prot	moderate database homology
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	39.535%	Swiss-Prot	moderate database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	36.652%	Swiss-Prot	moderate database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	36.697%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card