LXL04_032780 | RubberDandelionOmics

Gene overview

LXL04_032780

Reference: OH-1004 Chr: Chr07 Coordinates: 29212065-29212722 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

561 bp · LXL04_032780|LXL04_032780|OH1004|cDNA

ATGGATTCAAAGGTTGGAGGCACCCAGTTGCAAAAGTTATTCTCTTATGATGAATTTGAACCCATGTGCACATGGCAACGCGAAGATGATCAAGATGTACTCGTGCTTCATCTCCCAGAGTTTAAGAAGGATCAACTAAGAATCCAGATTAGCAACACTGGGATTTTAAAGATCACTGGAGAAAATGTTATAGATGGTAAAAGACGGAACCGTTTCTTGAAAGAAATCAAAGTCACAAAAGATTACGACTCAAATAACAT...

CDS

Download CDS FASTA

561 bp · LXL04_032780|LXL04_032780|OH1004|CDS

ATGGATTCAAAGGTTGGAGGCACCCAGTTGCAAAAGTTATTCTCTTATGATGAATTTGAACCCATGTGCACATGGCAACGCGAAGATGATCAAGATGTACTCGTGCTTCATCTCCCAGAGTTTAAGAAGGATCAACTAAGAATCCAGATTAGCAACACTGGGATTTTAAAGATCACTGGAGAAAATGTTATAGATGGTAAAAGACGGAACCGTTTCTTGAAAGAAATCAAAGTCACAAAAGATTACGACTCAAATAACAT...

Protein

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186 aa · LXL04_032780|LXL04_032780|OH1004|PROTEIN

MDSKVGGTQLQKLFSYDEFEPMCTWQREDDQDVLVLHLPEFKKDQLRIQISNTGILKITGENVIDGKRRNRFLKEIKVTKDYDSNNIHAKFSQGRLRVTMPKKVQTPPPIESPSPPVMSLPQDNKNDNANTNEKIVVPDIRARVGKVLKSKEFSSVMVNVGFVAAAAFSIYVAYKYWTMYVQVDED

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032780`
TK1151 ID	TkA08G204350
OH-1004 ID	LXL04_032780
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032780

Location Chr07:29212065-29212722 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: D9UC01`	Does not seem to be involved in heat resistance (By similarity).	No verified direct reference in this release
`UniProt: D5K211`	Does not seem to be involved in heat resistance (By similarity).	No verified direct reference in this release
`UniProt: D9UBX6`	Does not seem to be involved in heat resistance (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032780 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.494

Rank 1 · LXL04_032780 · OH-1004

Cell membrane0.199

Rank 2 · LXL04_032780 · OH-1004

Nucleus0.182

Rank 3 · LXL04_032780 · OH-1004

Cytoplasm0.168

Rank 4 · LXL04_032780 · OH-1004

Golgi apparatus0.114

Rank 5 · LXL04_032780 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00011.28HSP2025-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032780	`PF00011.28`	HSP20	25	106	2.3e-08	34.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`D9UC01`	Arabidopsis thaliana	Inactive protein RESTRICTED TEV MOVEMENT 2	27.174%	Swiss-Prot	weak database homology
`D5K211`	Arabidopsis thaliana	Inactive protein RESTRICTED TEV MOVEMENT 2	27.174%	Swiss-Prot	weak database homology
`D9UBX6`	Arabidopsis thaliana	Inactive protein RESTRICTED TEV MOVEMENT 2	26.087%	Swiss-Prot	weak database homology

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