LXL04_032739 | RubberDandelionOmics

Gene overview

LXL04_032739

Reference: OH-1004 Chr: Chr07 Coordinates: 28763301-28765414 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

732 bp · LXL04_032739|LXL04_032739|OH1004|cDNA

ATGGGTGGGAAACAACCCGTAACAGCACAGCTTGCAAGTATGACTTCACCTACCGAGGAGCCAAAGAGGCGTGACTCTCATCGGTCTTCACGTCCTCCTCTCAATGAAAGGATACTTACATCCATGAACAGAAGATCAGTTGCTGCACATCCATGGCATGATCTTGAAATAGGACCTGGTGCCCCCACGATCTTCAATGTTGTAAGGATACAATTCCCTTTTGCTGAAACCTATGTATTCTTTCAGGTTATTGAAATCAG...

CDS

Download CDS FASTA

732 bp · LXL04_032739|LXL04_032739|OH1004|CDS

ATGGGTGGGAAACAACCCGTAACAGCACAGCTTGCAAGTATGACTTCACCTACCGAGGAGCCAAAGAGGCGTGACTCTCATCGGTCTTCACGTCCTCCTCTCAATGAAAGGATACTTACATCCATGAACAGAAGATCAGTTGCTGCACATCCATGGCATGATCTTGAAATAGGACCTGGTGCCCCCACGATCTTCAATGTTGTAAGGATACAATTCCCTTTTGCTGAAACCTATGTATTCTTTCAGGTTATTGAAATCAG...

Protein

Download Protein FASTA

243 aa · LXL04_032739|LXL04_032739|OH1004|PROTEIN

MGGKQPVTAQLASMTSPTEEPKRRDSHRSSRPPLNERILTSMNRRSVAAHPWHDLEIGPGAPTIFNVVRIQFPFAETYVFFQVIEISKGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPILPGCFLRAKAIGVMPMIDQGEKDDKIIAVCADDPEYRHYTDINELPPHRLAEIRRFFEDYKKNENKEVAVDDFLPHDKAIEAVSHSMDLYADYIVEGLRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032739`
TK1151 ID	TkA08G202220
OH-1004 ID	LXL04_032739
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.500
Protein coverage (%)	TK1151 100.000 / OH-1004 94.650 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032739

Location Chr07:28763301-28765414 (+)

Description Similar to PPA1: Soluble inorganic pyrophosphatase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01050`	Catalyzes the irreversible hydrolysis of pyrophosphate (PPi) to phosphate.	Oil and protein accumulation in developing seeds is influenced by the expression of a cytosolic pyrophosphatase in Arabidopsis.2012 · DOI: 10.1104/pp.112.198309
`At3g53620`	Catalyzes the irreversible hydrolysis of pyrophosphate (PPi) to phosphate.	No verified direct reference in this release
`At4g01480`	Soluble inorganic pyrophosphatase 5.	No verified direct reference in this release
`At2g46860`	Soluble inorganic pyrophosphatase 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032739 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0006796 phosphate-containing compound metabolic process Biological Process

GO:0010581 regulation of starch biosynthetic process Biological Process

GO:0019915 lipid storage Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071344 diphosphate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004427 inorganic diphosphate phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01050

ath:AT2G46860

ath:AT3G53620

ath:AT4G01480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.536

Rank 1 · LXL04_032739 · OH-1004

Nucleus0.313

Rank 2 · LXL04_032739 · OH-1004

Cell membrane0.133

Rank 3 · LXL04_032739 · OH-1004

Plastid0.091

Rank 4 · LXL04_032739 · OH-1004

Endoplasmic reticulum0.090

Rank 5 · LXL04_032739 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00719.25Pyrophosphatase83-233 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032739	`PF00719.25`	Pyrophosphatase	83	233	1.7e-58	197.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93V56`	Arabidopsis thaliana	Soluble inorganic pyrophosphatase 1	77.477%	Swiss-Prot	strong database homology
`Q9LFF9`	Arabidopsis thaliana	Soluble inorganic pyrophosphatase 4	79.439%	Swiss-Prot	strong database homology
`O82597`	Arabidopsis thaliana	Soluble inorganic pyrophosphatase 5	75.664%	Swiss-Prot	strong database homology
`O82793`	Arabidopsis thaliana	Soluble inorganic pyrophosphatase 3	73.423%	Swiss-Prot	strong database homology

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