LXL04_032708 | RubberDandelionOmics

Gene overview

LXL04_032708

Reference: OH-1004 Chr: Chr07 Coordinates: 28099604-28100147 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

402 bp · LXL04_032708|LXL04_032708|OH1004|cDNA

ATGAACCCTAACAAATCCCCTTCTGTTGCATCATCGCTGATCATCACTGCCTTCTTGCTGTTCTCCACTTTCGATTTCGGGGTTTGCGAAGCTGAAAAAGGTATGATAAGGTCCCAAAAGATAGGCGGAATTCGTGATATAGCGGATAATGGGATCGAGATAGAAACCCTCGCTCGATTCGCTGTCGAACAACACAACACAAAAGAGAACTCCCTTCTCAAGTTCTCTAGATTGATAAAGGCGAAAGAGCAGGTGGTTGC...

CDS

Download CDS FASTA

402 bp · LXL04_032708|LXL04_032708|OH1004|CDS

ATGAACCCTAACAAATCCCCTTCTGTTGCATCATCGCTGATCATCACTGCCTTCTTGCTGTTCTCCACTTTCGATTTCGGGGTTTGCGAAGCTGAAAAAGGTATGATAAGGTCCCAAAAGATAGGCGGAATTCGTGATATAGCGGATAATGGGATCGAGATAGAAACCCTCGCTCGATTCGCTGTCGAACAACACAACACAAAAGAGAACTCCCTTCTCAAGTTCTCTAGATTGATAAAGGCGAAAGAGCAGGTGGTTGC...

Protein

Download Protein FASTA

133 aa · LXL04_032708|LXL04_032708|OH1004|PROTEIN

MNPNKSPSVASSLIITAFLLFSTFDFGVCEAEKGMIRSQKIGGIRDIADNGIEIETLARFAVEQHNTKENSLLKFSRLIKAKEQVVAGMMYYLTLEATNADGKVKVYETKVWVKPWMNVKEVQEFKASNEQSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032708`
TK1151 ID	TkA08G199850
OH-1004 ID	LXL04_032708
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032708

Location Chr07:28099604-28100147 (+)

Description Similar to CYS3: Cysteine proteinase inhibitor 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12490`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`At2g40880`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`At5g05110`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0270100`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032708 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0006972 hyperosmotic response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004869 cysteine-type endopeptidase inhibitor activity Molecular Function

GO:0050897 cobalt ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G40880

ath:AT3G12490

ath:AT5G05110

dosa:Os01g0270100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.468

Rank 1 · LXL04_032708 · OH-1004

Endoplasmic reticulum0.217

Rank 2 · LXL04_032708 · OH-1004

Cytoplasm0.157

Rank 3 · LXL04_032708 · OH-1004

Lysosome / Vacuole0.157

Rank 4 · LXL04_032708 · OH-1004

Cell membrane0.092

Rank 5 · LXL04_032708 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00031.28Cystatin42-127 aa

PF16845.12SQAPI44-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032708	`PF00031.28`	Cystatin	42	127	1.1e-19	71.2
LXL04_032708	`PF16845.12`	SQAPI	44	127	1.3e-19	71.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H0X6`	Arabidopsis thaliana	Cysteine proteinase inhibitor 6	46.617%	Swiss-Prot	moderate database homology
`Q41906`	Arabidopsis thaliana	Cysteine proteinase inhibitor 3	46.341%	Swiss-Prot	moderate database homology
`Q8LC76`	Arabidopsis thaliana	Cysteine proteinase inhibitor 7	46.154%	Swiss-Prot	moderate database homology
`Q0JNR2`	Oryza sativa subsp. japonica	Cysteine proteinase inhibitor 12	55.435%	Swiss-Prot	moderate database homology

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